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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3723 | + | 94680 | 90 | 19.5 | -31.6 | NP_042641 | 5' arm 3' arm | ||
| 3578 | + | 4646 | 86 | 22.5 | -31.4 | 5' arm 3' arm | |||
| 3810 | + | 171520 | 86 | 22.5 | -31.4 | 5' arm 3' arm | |||
| 3776 | + | 137125 | 90 | 21 | -31.3 | NP_042664 | 5' arm 3' arm | ||
| 3925 | - | 82411 | 84 | 22.5 | -31.2 | NP_042631 | 5' arm 3' arm | ||
| 3897 | - | 56732 | 90 | 21.5 | -31.1 | 5' arm 3' arm | |||
| 3587 | + | 9029 | 88 | 27 | -31 | 5' arm 3' arm | |||
| 3819 | + | 175903 | 88 | 27 | -31 | 5' arm 3' arm | |||
| 3619 | + | 36521 | 90 | 20 | -30.9 | NP_042605 | 5' arm 3' arm | ||
| 3680 | + | 68818 | 90 | 21.5 | -30.8 | NP_042620 | 5' arm 3' arm | ||
| 4035 | - | 162030 | 90 | 29 | -30.8 | 5' arm 3' arm | |||
| 3683 | + | 71700 | 90 | 24.5 | -30.8 | NP_042621 | 5' arm 3' arm | ||
| 3773 | + | 136000 | 88 | 19 | -30.8 | NP_042663 | 5' arm 3' arm | ||
| 3966 | - | 110652 | 83 | 19.5 | -30.7 | NP_042654 | 5' arm 3' arm | ||
| 3789 | + | 150685 | 90 | 30 | -30.7 | 5' arm 3' arm | |||
| 4021 | - | 143941 | 89 | 22.5 | -30.5 | NP_042668 | 5' arm 3' arm | ||
| 3598 | + | 21745 | 88 | 19.5 | -30.5 | NP_042600 | 5' arm 3' arm | ||
| 3672 | + | 61316 | 89 | 21 | -30.5 | NP_042615 | 5' arm 3' arm | ||
| 3858 | - | 23663 | 90 | 22.5 | -30.5 | NP_042600 | 5' arm 3' arm | ||
| 4032 | - | 158859 | 90 | 20.5 | -30.4 | NP_042672 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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