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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3786 | + | 149017 | 81 | 19 | -25.5 | 5' arm 3' arm | |||
| 3766 | + | 126935 | 87 | 19 | -24.8 | NP_042661 | 5' arm 3' arm | ||
| 4046 | - | 173498 | 85 | 19 | -22.4 | 5' arm 3' arm | |||
| 3684 | + | 72781 | 90 | 19 | -22.4 | NP_042621 | 5' arm 3' arm | ||
| 3577 | + | 4215 | 81 | 19 | -25.9 | 5' arm 3' arm | |||
| 3773 | + | 136000 | 88 | 19 | -30.8 | NP_042663 | 5' arm 3' arm | ||
| 3964 | - | 109357 | 89 | 19 | -22.4 | NP_042653 | 5' arm 3' arm | ||
| 3622 | + | 37252 | 86 | 19 | -22.4 | NP_042605 | 5' arm 3' arm | ||
| 3746 | + | 118784 | 87 | 19 | -22.3 | NP_042658 | 5' arm 3' arm | ||
| 4013 | - | 136713 | 87 | 19 | -22.7 | NP_042663 | 5' arm 3' arm | ||
| 3671 | + | 61148 | 89 | 19 | -25.3 | NP_042615 | 5' arm 3' arm | ||
| 3724 | + | 95115 | 86 | 19 | -22.4 | NP_042641 | 5' arm 3' arm | ||
| 3701 | + | 83948 | 84 | 19 | -20.5 | NP_042633 | 5' arm 3' arm | ||
| 3703 | + | 87122 | 88 | 19 | -23.5 | NP_042636 | 5' arm 3' arm | ||
| 3663 | + | 58943 | 90 | 19 | -20.9 | NP_042612 | 5' arm 3' arm | ||
| 3768 | + | 127887 | 90 | 19 | -20.3 | NP_042661 | 5' arm 3' arm | ||
| 3615 | + | 35300 | 87 | 19 | -33.9 | NP_042605 | 5' arm 3' arm | ||
| 3586 | + | 8862 | 90 | 19 | -21.1 | 5' arm 3' arm | |||
| 3584 | + | 7602 | 89 | 19 | -22.5 | 5' arm 3' arm | |||
| 4009 | - | 135032 | 89 | 19 | -20.7 | NP_042662 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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