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| GenBank Identifier | RefSeq Acc. | Name |
| 9628002 | NC_001650.1 | Equid herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3791 | + | 151528 | 90 | 24 | -19.8 | 5' arm 3' arm | |||
| 3720 | + | 93902 | 87 | 23 | -19.8 | NP_042641 | 5' arm 3' arm | ||
| 3674 | + | 64801 | 87 | 20.5 | -19.8 | NP_042618 | 5' arm 3' arm | ||
| 3923 | - | 80927 | 89 | 20 | -19.8 | NP_042629 | 5' arm 3' arm | ||
| 4005 | - | 134309 | 89 | 23 | -19.9 | 5' arm 3' arm | |||
| 3610 | + | 28473 | 90 | 21.5 | -19.9 | NP_042602 | 5' arm 3' arm | ||
| 4048 | - | 174637 | 89 | 19.5 | -19.9 | 5' arm 3' arm | |||
| 3820 | + | 177983 | 89 | 23.5 | -19.9 | 5' arm 3' arm | |||
| 3588 | + | 11109 | 89 | 23.5 | -19.9 | 5' arm 3' arm | |||
| 3944 | - | 93357 | 89 | 21 | -19.9 | NP_042641 | 5' arm 3' arm | ||
| 3918 | - | 74498 | 89 | 19 | -19.9 | NP_042622 | 5' arm 3' arm | ||
| 3834 | - | 7763 | 89 | 19.5 | -19.9 | 5' arm 3' arm | |||
| 3669 | + | 60779 | 86 | 21 | -19.9 | NP_042615 | 5' arm 3' arm | ||
| 3927 | - | 83286 | 87 | 22.5 | -20 | NP_042632 | 5' arm 3' arm | ||
| 3707 | + | 88469 | 90 | 19.5 | -20 | NP_042637 | 5' arm 3' arm | ||
| 3929 | - | 84828 | 86 | 20 | -20.1 | NP_042634 | 5' arm 3' arm | ||
| 3943 | - | 93261 | 86 | 19.5 | -20.1 | NP_042641 | 5' arm 3' arm | ||
| 3869 | - | 31727 | 88 | 19 | -20.1 | NP_042603 | 5' arm 3' arm | ||
| 3655 | + | 50161 | 86 | 22 | -20.1 | NP_042609 | 5' arm 3' arm | ||
| 3717 | + | 92160 | 90 | 21.5 | -20.1 | NP_042640 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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