miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628002 NC_001650.1 Equid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3822 + 179086 87 25 -19.4 5' arm      3' arm
3700 + 83712 88 20 -19.4 NP_042633 5' arm      3' arm
3997 - 128188 90 24.5 -19.4 NP_042661 5' arm      3' arm
3590 + 12212 87 25 -19.4 5' arm      3' arm
3697 + 82773 90 21 -19.4 NP_042631 5' arm      3' arm
3782 + 146207 88 20 -19.4 NP_042669 5' arm      3' arm
3865 - 28682 88 20.5 -19.5 NP_042602 5' arm      3' arm
4000 - 129880 90 19.5 -19.5 NP_042661 5' arm      3' arm
3940 - 91042 87 19 -19.5 NP_042639 5' arm      3' arm
3880 - 40756 89 25.5 -19.5 5' arm      3' arm
3591 + 13837 87 21 -19.6 5' arm      3' arm
4004 - 134170 82 22 -19.6 5' arm      3' arm
3805 + 166276 89 19 -19.6 5' arm      3' arm
3905 - 68077 90 20 -19.6 NP_042620 5' arm      3' arm
3771 + 135174 89 20 -19.6 NP_042662 5' arm      3' arm
3823 + 180711 87 21 -19.6 5' arm      3' arm
3613 + 31491 90 20.5 -19.6 NP_042603 5' arm      3' arm
3801 + 158810 90 21 -19.7 NP_042672 5' arm      3' arm
3721 + 94069 90 20.5 -19.7 NP_042641 5' arm      3' arm
3601 + 23677 84 20.5 -19.7 NP_042600 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.