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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26475 | + | 13045 | 90 | 20.5 | -21.3 | NP_958680 | 5' arm 3' arm | ||
| 26478 | + | 13523 | 83 | 20 | -27 | NP_958680 | 5' arm 3' arm | ||
| 26477 | + | 13275 | 88 | 22 | -27.1 | NP_958680 | 5' arm 3' arm | ||
| 26481 | + | 14633 | 87 | 25 | -25.7 | NP_958681 | 5' arm 3' arm | ||
| 26483 | + | 15019 | 89 | 25 | -29.3 | NP_958681 | 5' arm 3' arm | ||
| 26482 | + | 14923 | 89 | 22 | -20.2 | NP_958681 | 5' arm 3' arm | ||
| 26489 | + | 16486 | 90 | 21 | -21.7 | NP_958682 | 5' arm 3' arm | ||
| 26485 | + | 16014 | 90 | 20.5 | -23.6 | NP_958682 | 5' arm 3' arm | ||
| 26487 | + | 16207 | 89 | 19 | -27.9 | NP_958682 | 5' arm 3' arm | ||
| 26492 | + | 17064 | 90 | 21.5 | -22 | NP_958682 | 5' arm 3' arm | ||
| 26490 | + | 16704 | 84 | 21 | -22.8 | NP_958682 | 5' arm 3' arm | ||
| 26555 | - | 15320 | 86 | 19 | -19.8 | NP_958682 | 5' arm 3' arm | ||
| 26559 | - | 17076 | 90 | 23.5 | -28.8 | NP_958682 | 5' arm 3' arm | ||
| 26556 | - | 15516 | 89 | 20 | -26.63 | NP_958682 | 5' arm 3' arm | ||
| 26491 | + | 16815 | 86 | 19.5 | -28 | NP_958682 | 5' arm 3' arm | ||
| 26488 | + | 16374 | 90 | 22.5 | -22.4 | NP_958682 | 5' arm 3' arm | ||
| 26557 | - | 15828 | 90 | 21 | -23.4 | NP_958682 | 5' arm 3' arm | ||
| 26558 | - | 16221 | 90 | 20 | -22.1 | NP_958682 | 5' arm 3' arm | ||
| 26484 | + | 15559 | 90 | 19 | -23.4 | NP_958682 | 5' arm 3' arm | ||
| 26486 | + | 16105 | 90 | 21.5 | -23.9 | NP_958682 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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