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| GenBank Identifier | RefSeq Acc. | Name |
| 18496886 | NC_003387.1 | Mycobacteriophage TM4 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 12895 | - | 6223 | 90 | 19 | -23 | NP_569745 | 5' arm 3' arm | ||
| 12787 | + | 6627 | 89 | 22.5 | -23.7 | NP_569745 | 5' arm 3' arm | ||
| 12896 | - | 6314 | 85 | 23 | -24.91 | NP_569745 | 5' arm 3' arm | ||
| 12897 | - | 6622 | 88 | 19.5 | -20.7 | NP_569745 | 5' arm 3' arm | ||
| 12788 | + | 7070 | 90 | 20.5 | -21.7 | NP_569746 | 5' arm 3' arm | ||
| 12899 | - | 7849 | 90 | 19.5 | -20.5 | NP_569748 | 5' arm 3' arm | ||
| 12900 | - | 7969 | 88 | 24 | -27.5 | NP_569748 | 5' arm 3' arm | ||
| 12902 | - | 8988 | 87 | 19.5 | -25.4 | NP_569750 | 5' arm 3' arm | ||
| 12789 | + | 9643 | 89 | 21.5 | -25.5 | NP_569751 | 5' arm 3' arm | ||
| 12798 | + | 13323 | 90 | 23.5 | -28.5 | NP_569753 | 5' arm 3' arm | ||
| 12907 | - | 13086 | 88 | 21 | -22.4 | NP_569753 | 5' arm 3' arm | ||
| 12905 | - | 12399 | 90 | 24 | -25.4 | NP_569753 | 5' arm 3' arm | ||
| 12908 | - | 13411 | 88 | 20 | -19.9 | NP_569753 | 5' arm 3' arm | ||
| 12910 | - | 13856 | 88 | 20 | -28 | NP_569753 | 5' arm 3' arm | ||
| 12790 | + | 10227 | 87 | 19 | -29.6 | NP_569753 | 5' arm 3' arm | ||
| 12797 | + | 12573 | 86 | 19.5 | -20.9 | NP_569753 | 5' arm 3' arm | ||
| 12793 | + | 10997 | 89 | 20 | -21 | NP_569753 | 5' arm 3' arm | ||
| 12796 | + | 11596 | 81 | 20.5 | -26.4 | NP_569753 | 5' arm 3' arm | ||
| 12794 | + | 11111 | 88 | 20.5 | -23.8 | NP_569753 | 5' arm 3' arm | ||
| 12792 | + | 10895 | 90 | 19.5 | -23.7 | NP_569753 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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