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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 30228 | - | 213882 | 85 | 26.5 | -32.9 | YP_081604 | 5' arm 3' arm | ||
| 30227 | - | 213043 | 89 | 19.5 | -21.7 | YP_081603 | 5' arm 3' arm | ||
| 30226 | - | 212205 | 90 | 23 | -33 | YP_081602 | 5' arm 3' arm | ||
| 30225 | - | 211320 | 89 | 21 | -23.1 | YP_081601 | 5' arm 3' arm | ||
| 30224 | - | 209832 | 88 | 22 | -22.3 | YP_081600 | 5' arm 3' arm | ||
| 29959 | + | 209317 | 87 | 28 | -22.4 | YP_081599 | 5' arm 3' arm | ||
| 29958 | + | 208936 | 90 | 20 | -19.7 | YP_081599 | 5' arm 3' arm | ||
| 30223 | - | 208980 | 90 | 20 | -20.4 | YP_081599 | 5' arm 3' arm | ||
| 29960 | + | 209412 | 88 | 24 | -24.1 | YP_081599 | 5' arm 3' arm | ||
| 29957 | + | 206874 | 89 | 20.5 | -27.5 | YP_081597 | 5' arm 3' arm | ||
| 30222 | - | 207278 | 90 | 21 | -22.06 | YP_081597 | 5' arm 3' arm | ||
| 30220 | - | 206086 | 89 | 21.5 | -23 | YP_081596 | 5' arm 3' arm | ||
| 30221 | - | 206464 | 89 | 21 | -21.9 | YP_081596 | 5' arm 3' arm | ||
| 30219 | - | 205499 | 82 | 20.5 | -23.9 | YP_081595 | 5' arm 3' arm | ||
| 30218 | - | 204939 | 89 | 21.5 | -20.9 | YP_081594 | 5' arm 3' arm | ||
| 30217 | - | 204430 | 90 | 19.5 | -24.1 | YP_081594 | 5' arm 3' arm | ||
| 30216 | - | 204172 | 90 | 20.5 | -22.8 | YP_081593 | 5' arm 3' arm | ||
| 30215 | - | 203772 | 90 | 21.5 | -26.34 | YP_081593 | 5' arm 3' arm | ||
| 29956 | + | 203687 | 83 | 20 | -31.2 | YP_081593 | 5' arm 3' arm | ||
| 29951 | + | 199799 | 83 | 19 | -21.8 | YP_081589 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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