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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26580 | - | 29578 | 90 | 22.5 | -19.5 | NP_958698 | 5' arm 3' arm | ||
| 26579 | - | 29467 | 90 | 21 | -24.3 | NP_958698 | 5' arm 3' arm | ||
| 26577 | - | 28358 | 87 | 21.5 | -26.2 | NP_958698 | 5' arm 3' arm | ||
| 26520 | + | 27694 | 88 | 19.5 | -26 | NP_958698 | 5' arm 3' arm | ||
| 26578 | - | 29010 | 86 | 21 | -19.4 | NP_958698 | 5' arm 3' arm | ||
| 26518 | + | 26842 | 90 | 20 | -23.2 | NP_958697 | 5' arm 3' arm | ||
| 26574 | - | 27007 | 86 | 22 | -20.8 | NP_958697 | 5' arm 3' arm | ||
| 26573 | - | 26490 | 86 | 19 | -19.9 | NP_958696 | 5' arm 3' arm | ||
| 26517 | + | 26174 | 83 | 20 | -23.8 | NP_958695 | 5' arm 3' arm | ||
| 26516 | + | 25780 | 90 | 22.5 | -30.3 | NP_958695 | 5' arm 3' arm | ||
| 26514 | + | 24501 | 89 | 20 | -22.3 | NP_958694 | 5' arm 3' arm | ||
| 26571 | - | 24556 | 89 | 22.5 | -21.7 | NP_958694 | 5' arm 3' arm | ||
| 26515 | + | 24594 | 90 | 23 | -24.2 | NP_958694 | 5' arm 3' arm | ||
| 26572 | - | 25101 | 89 | 23.5 | -24.5 | NP_958694 | 5' arm 3' arm | ||
| 26513 | + | 23940 | 90 | 21.5 | -25.3 | NP_958693 | 5' arm 3' arm | ||
| 26569 | - | 23953 | 90 | 22.5 | -25.6 | NP_958693 | 5' arm 3' arm | ||
| 26568 | - | 23571 | 87 | 20.5 | -22.7 | NP_958692 | 5' arm 3' arm | ||
| 26512 | + | 22874 | 89 | 20 | -26.2 | NP_958691 | 5' arm 3' arm | ||
| 26511 | + | 22667 | 89 | 21.5 | -27.2 | NP_958690 | 5' arm 3' arm | ||
| 26505 | + | 21064 | 88 | 22 | -20.4 | NP_958690 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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