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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28850 | + | 115550 | 82 | 21.5 | -24.9 | YP_067994 | 5' arm 3' arm | ||
| 28851 | + | 116905 | 87 | 20 | -24.7 | YP_067994 | 5' arm 3' arm | ||
| 29088 | - | 118638 | 90 | 20.5 | -24.4 | YP_067994 | 5' arm 3' arm | ||
| 29087 | - | 115234 | 86 | 19.5 | -23.3 | YP_067994 | 5' arm 3' arm | ||
| 29086 | - | 114474 | 86 | 20 | -21.6 | YP_067993 | 5' arm 3' arm | ||
| 28849 | + | 114755 | 88 | 21 | -24.6 | YP_067993 | 5' arm 3' arm | ||
| 28847 | + | 114187 | 89 | 22.5 | -31 | YP_067993 | 5' arm 3' arm | ||
| 28848 | + | 114549 | 89 | 23 | -21.4 | YP_067993 | 5' arm 3' arm | ||
| 28846 | + | 113714 | 89 | 21 | -20.6 | YP_067992 | 5' arm 3' arm | ||
| 29085 | - | 113283 | 79 | 21 | -32.7 | YP_067992 | 5' arm 3' arm | ||
| 28845 | + | 112590 | 88 | 24.5 | -21.2 | YP_067991 | 5' arm 3' arm | ||
| 28844 | + | 111981 | 86 | 19 | -25.3 | YP_067991 | 5' arm 3' arm | ||
| 28843 | + | 110300 | 90 | 22.5 | -25.3 | YP_067990 | 5' arm 3' arm | ||
| 28842 | + | 110186 | 87 | 20 | -26.4 | YP_067990 | 5' arm 3' arm | ||
| 28841 | + | 109248 | 90 | 21 | -31.6 | YP_067989 | 5' arm 3' arm | ||
| 29079 | - | 108579 | 89 | 19.5 | -23.5 | YP_067989 | 5' arm 3' arm | ||
| 29081 | - | 109738 | 88 | 20.5 | -23.4 | YP_067989 | 5' arm 3' arm | ||
| 29080 | - | 108693 | 90 | 19.5 | -24.6 | YP_067989 | 5' arm 3' arm | ||
| 29078 | - | 108162 | 90 | 21.5 | -21.4 | YP_067988 | 5' arm 3' arm | ||
| 29082 | - | 111367 | 83 | 20 | -24.1 | YP_067987 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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