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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28868 | + | 134008 | 89 | 25.5 | -27.4 | rlcv-mir-rL1-8 | 5' arm | ||
| 28891 | + | 143266 | 84 | 24.5 | -27.4 | rlcv-mir-rL1-15 | 3' arm | ||
| 28915 | + | 155662 | 87 | 23 | -27.4 | YP_068010 | 5' arm 3' arm | ||
| 28792 | + | 53958 | 89 | 19 | -27.3 | YP_067951 | 5' arm 3' arm | ||
| 28862 | + | 131753 | 89 | 22.5 | -27.3 | YP_068002 | 5' arm 3' arm | ||
| 28772 | + | 44451 | 90 | 23.5 | -27.3 | YP_067950 | 5' arm 3' arm | ||
| 28853 | + | 119275 | 89 | 23.5 | -27.3 | 5' arm 3' arm | |||
| 28781 | + | 48600 | 89 | 23 | -27.2 | YP_067950 | 5' arm 3' arm | ||
| 29048 | - | 87320 | 89 | 25 | -27.2 | YP_067971 | 5' arm 3' arm | ||
| 28804 | + | 65374 | 90 | 22 | -27.1 | YP_067957 | 5' arm 3' arm | ||
| 28959 | - | 17300 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 29125 | - | 144591 | 89 | 23 | -27 | 5' arm 3' arm | |||
| 28977 | - | 23462 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 29141 | - | 158703 | 82 | 19 | -27 | YP_068012 | 5' arm 3' arm | ||
| 28951 | - | 14219 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 29060 | - | 96533 | 86 | 25 | -27 | YP_067978 | 5' arm 3' arm | ||
| 28994 | - | 29624 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 28968 | - | 20381 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 28910 | + | 153898 | 90 | 23 | -27 | YP_068009 | 5' arm 3' arm | ||
| 29139 | - | 157550 | 90 | 19.5 | -26.8 | YP_068012 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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