miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29028 - 62340 89 27 -28.6 YP_067955 5' arm      3' arm
29037 - 79348 89 22.5 -28.51 YP_067966 5' arm      3' arm
28814 + 73839 86 21 -28.5 5' arm      3' arm
29146 - 160860 84 20 -28.5 YP_068013 5' arm      3' arm
28817 + 83747 89 20 -28.5 YP_067968 5' arm      3' arm
29053 - 92936 87 20 -28.41 YP_067976 5' arm      3' arm
29006 - 35396 86 20 -28.4 5' arm      3' arm
28883 + 141443 90 19 -28.3 5' arm      3' arm
29131 - 151908 88 22.5 -28.2 YP_068008 5' arm      3' arm
28838 + 105080 88 20 -28.1 YP_067985 5' arm      3' arm
29130 - 151701 89 19 -28.1 YP_068007 5' arm      3' arm
28873 + 134712 89 29 -28 5' arm      3' arm
28833 + 100941 88 23 -28 YP_067982 5' arm      3' arm
28767 + 40720 90 20 -27.9 YP_067947 5' arm      3' arm
28884 + 141542 89 28.5 -27.9 rlcv-mir-rL1-12 5' arm      3' arm
29095 - 123158 90 21.5 -27.6 YP_067997 5' arm      3' arm
28922 + 160728 89 21.5 -27.6 YP_068013 5' arm      3' arm
28912 + 154774 90 21.5 -27.5 YP_068009 5' arm      3' arm
28768 + 41433 90 22 -27.5 YP_067948 5' arm      3' arm
28915 + 155662 87 23 -27.4 YP_068010 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.