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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29028 | - | 62340 | 89 | 27 | -28.6 | YP_067955 | 5' arm 3' arm | ||
| 29037 | - | 79348 | 89 | 22.5 | -28.51 | YP_067966 | 5' arm 3' arm | ||
| 28814 | + | 73839 | 86 | 21 | -28.5 | 5' arm 3' arm | |||
| 28817 | + | 83747 | 89 | 20 | -28.5 | YP_067968 | 5' arm 3' arm | ||
| 29146 | - | 160860 | 84 | 20 | -28.5 | YP_068013 | 5' arm 3' arm | ||
| 29053 | - | 92936 | 87 | 20 | -28.41 | YP_067976 | 5' arm 3' arm | ||
| 29006 | - | 35396 | 86 | 20 | -28.4 | 5' arm 3' arm | |||
| 28883 | + | 141443 | 90 | 19 | -28.3 | 5' arm 3' arm | |||
| 29131 | - | 151908 | 88 | 22.5 | -28.2 | YP_068008 | 5' arm 3' arm | ||
| 28838 | + | 105080 | 88 | 20 | -28.1 | YP_067985 | 5' arm 3' arm | ||
| 29130 | - | 151701 | 89 | 19 | -28.1 | YP_068007 | 5' arm 3' arm | ||
| 28873 | + | 134712 | 89 | 29 | -28 | 5' arm 3' arm | |||
| 28833 | + | 100941 | 88 | 23 | -28 | YP_067982 | 5' arm 3' arm | ||
| 28884 | + | 141542 | 89 | 28.5 | -27.9 | rlcv-mir-rL1-12 | 5' arm 3' arm | ||
| 28767 | + | 40720 | 90 | 20 | -27.9 | YP_067947 | 5' arm 3' arm | ||
| 28922 | + | 160728 | 89 | 21.5 | -27.6 | YP_068013 | 5' arm 3' arm | ||
| 29095 | - | 123158 | 90 | 21.5 | -27.6 | YP_067997 | 5' arm 3' arm | ||
| 28912 | + | 154774 | 90 | 21.5 | -27.5 | YP_068009 | 5' arm 3' arm | ||
| 28768 | + | 41433 | 90 | 22 | -27.5 | YP_067948 | 5' arm 3' arm | ||
| 28915 | + | 155662 | 87 | 23 | -27.4 | YP_068010 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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