miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28754	+	26838	89	19.5	-21.5			5' arm      3' arm
28751	+	23757	89	19.5	-21.5			5' arm      3' arm
28907	+	152362	86	19.5	-19.4	YP_068009		5' arm      3' arm
29087	-	115234	86	19.5	-23.3	YP_067994		5' arm      3' arm
29090	-	120698	89	19.5	-20.31	YP_067995		5' arm      3' arm
28748	+	20676	89	19.5	-21.5			5' arm      3' arm
29080	-	108693	90	19.5	-24.6	YP_067989		5' arm      3' arm
28764	+	38289	89	19.5	-22	YP_067945		5' arm      3' arm
28766	+	40029	90	19.5	-21.5	YP_067946		5' arm      3' arm
28821	+	88390	88	19.5	-21.4	YP_067972		5' arm      3' arm
28908	+	153336	90	19.5	-26	YP_068009		5' arm      3' arm
28864	+	133280	79	19.5	-23.8		rlcv-mir-rL1-4	3' arm
29094	-	121420	88	19.5	-21.5	YP_067996		5' arm      3' arm
28825	+	93351	90	19.5	-23.1	YP_067977		5' arm      3' arm
29079	-	108579	89	19.5	-23.5	YP_067989		5' arm      3' arm
28745	+	17595	89	19.5	-21.5			5' arm      3' arm
28829	+	94943	90	19.5	-19.5	YP_067977		5' arm      3' arm
28742	+	14514	89	19.5	-21.5			5' arm      3' arm
29155	-	168285	87	19.5	-26.6			5' arm      3' arm
29072	-	104388	90	19.5	-24.9	YP_067985		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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