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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28864 | + | 133280 | 79 | 19.5 | -23.8 | rlcv-mir-rL1-4 | 3' arm | ||
| 28908 | + | 153336 | 90 | 19.5 | -26 | YP_068009 | 5' arm 3' arm | ||
| 28821 | + | 88390 | 88 | 19.5 | -21.4 | YP_067972 | 5' arm 3' arm | ||
| 28766 | + | 40029 | 90 | 19.5 | -21.5 | YP_067946 | 5' arm 3' arm | ||
| 28764 | + | 38289 | 89 | 19.5 | -22 | YP_067945 | 5' arm 3' arm | ||
| 28748 | + | 20676 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
| 28829 | + | 94943 | 90 | 19.5 | -19.5 | YP_067977 | 5' arm 3' arm | ||
| 29076 | - | 106185 | 84 | 19.5 | -21.5 | YP_067986 | 5' arm 3' arm | ||
| 28751 | + | 23757 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
| 29080 | - | 108693 | 90 | 19.5 | -24.6 | YP_067989 | 5' arm 3' arm | ||
| 29094 | - | 121420 | 88 | 19.5 | -21.5 | YP_067996 | 5' arm 3' arm | ||
| 29072 | - | 104388 | 90 | 19.5 | -24.9 | YP_067985 | 5' arm 3' arm | ||
| 28825 | + | 93351 | 90 | 19.5 | -23.1 | YP_067977 | 5' arm 3' arm | ||
| 29156 | - | 169218 | 87 | 19.5 | -26.6 | 5' arm 3' arm | |||
| 28742 | + | 14514 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
| 29087 | - | 115234 | 86 | 19.5 | -23.3 | YP_067994 | 5' arm 3' arm | ||
| 29079 | - | 108579 | 89 | 19.5 | -23.5 | YP_067989 | 5' arm 3' arm | ||
| 28745 | + | 17595 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
| 29155 | - | 168285 | 87 | 19.5 | -26.6 | 5' arm 3' arm | |||
| 28928 | + | 164439 | 90 | 19.5 | -22.6 | YP_068017 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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