miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28745 + 17595 89 19.5 -21.5 5' arm      3' arm
28765 + 38540 88 23.5 -22.3 YP_067946 5' arm      3' arm
28762 + 36661 81 26 -23.1 rlcv-mir-rL1-2       3' arm
28760 + 34442 88 26 -22.3 5' arm      3' arm
28761 + 35308 87 26.5 -29.6 rlcv-mir-rL1-1 5' arm      
28759 + 30498 90 20.5 -22.1 5' arm      3' arm
28758 + 30367 87 22 -20.8 5' arm      3' arm
28755 + 28392 88 22 -24.5 5' arm      3' arm
28757 + 30273 83 22.5 -30.8 5' arm      3' arm
28756 + 29535 90 24.5 -25.1 5' arm      3' arm
28754 + 26838 89 19.5 -21.5 5' arm      3' arm
28751 + 23757 89 19.5 -21.5 5' arm      3' arm
28752 + 25311 88 22 -24.5 5' arm      3' arm
28753 + 26454 90 24.5 -25.1 5' arm      3' arm
28750 + 23373 90 24.5 -25.1 5' arm      3' arm
28748 + 20676 89 19.5 -21.5 5' arm      3' arm
28749 + 22230 88 22 -24.5 5' arm      3' arm
28746 + 19149 88 22 -24.5 5' arm      3' arm
28747 + 20292 90 24.5 -25.1 5' arm      3' arm
28742 + 14514 89 19.5 -21.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.