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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28733 | + | 4703 | 90 | 21.5 | -23.5 | YP_067940 | 5' arm 3' arm | ||
28754 | + | 26838 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
28763 | + | 36989 | 85 | 24 | -25.4 | 5' arm 3' arm | |||
28800 | + | 63452 | 89 | 19 | -23.9 | YP_067956 | 5' arm 3' arm | ||
28760 | + | 34442 | 88 | 26 | -22.3 | 5' arm 3' arm | |||
28933 | - | 2068 | 88 | 21 | -21.7 | YP_067940 | 5' arm 3' arm | ||
28759 | + | 30498 | 90 | 20.5 | -22.1 | 5' arm 3' arm | |||
28758 | + | 30367 | 87 | 22 | -20.8 | 5' arm 3' arm | |||
28755 | + | 28392 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28757 | + | 30273 | 83 | 22.5 | -30.8 | 5' arm 3' arm | |||
28756 | + | 29535 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28727 | + | 2465 | 88 | 21.5 | -25.3 | YP_067940 | 5' arm 3' arm | ||
28751 | + | 23757 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
28752 | + | 25311 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28753 | + | 26454 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28750 | + | 23373 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28748 | + | 20676 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
28749 | + | 22230 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28746 | + | 19149 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28747 | + | 20292 | 90 | 24.5 | -25.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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