miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28733 + 4703 90 21.5 -23.5 YP_067940 5' arm      3' arm
28754 + 26838 89 19.5 -21.5 5' arm      3' arm
28763 + 36989 85 24 -25.4 5' arm      3' arm
28800 + 63452 89 19 -23.9 YP_067956 5' arm      3' arm
28760 + 34442 88 26 -22.3 5' arm      3' arm
28933 - 2068 88 21 -21.7 YP_067940 5' arm      3' arm
28759 + 30498 90 20.5 -22.1 5' arm      3' arm
28758 + 30367 87 22 -20.8 5' arm      3' arm
28755 + 28392 88 22 -24.5 5' arm      3' arm
28757 + 30273 83 22.5 -30.8 5' arm      3' arm
28756 + 29535 90 24.5 -25.1 5' arm      3' arm
28727 + 2465 88 21.5 -25.3 YP_067940 5' arm      3' arm
28751 + 23757 89 19.5 -21.5 5' arm      3' arm
28752 + 25311 88 22 -24.5 5' arm      3' arm
28753 + 26454 90 24.5 -25.1 5' arm      3' arm
28750 + 23373 90 24.5 -25.1 5' arm      3' arm
28748 + 20676 89 19.5 -21.5 5' arm      3' arm
28749 + 22230 88 22 -24.5 5' arm      3' arm
28746 + 19149 88 22 -24.5 5' arm      3' arm
28747 + 20292 90 24.5 -25.1 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.