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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28728 | + | 2793 | 90 | 19 | -24.3 | YP_067940 | 5' arm 3' arm | ||
| 29129 | - | 151534 | 87 | 19 | -24.8 | YP_068008 | 5' arm 3' arm | ||
| 28844 | + | 111981 | 86 | 19 | -25.3 | YP_067991 | 5' arm 3' arm | ||
| 29030 | - | 67757 | 89 | 19 | -22.3 | YP_067958 | 5' arm 3' arm | ||
| 29052 | - | 92739 | 89 | 19 | -24.91 | YP_067976 | 5' arm 3' arm | ||
| 29136 | - | 156583 | 86 | 19 | -21.3 | YP_068011 | 5' arm 3' arm | ||
| 28792 | + | 53958 | 89 | 19 | -27.3 | YP_067951 | 5' arm 3' arm | ||
| 29031 | - | 69374 | 88 | 19 | -21.1 | YP_067960 | 5' arm 3' arm | ||
| 29032 | - | 69606 | 88 | 19 | -21 | YP_067960 | 5' arm 3' arm | ||
| 28943 | - | 9680 | 88 | 19 | -20.4 | 5' arm 3' arm | |||
| 29141 | - | 158703 | 82 | 19 | -27 | YP_068012 | 5' arm 3' arm | ||
| 29138 | - | 157349 | 89 | 19.5 | -22 | YP_068012 | 5' arm 3' arm | ||
| 29143 | - | 159604 | 90 | 19.5 | -24 | YP_068012 | 5' arm 3' arm | ||
| 29147 | - | 161633 | 80 | 19.5 | -24.3 | YP_068014 | 5' arm 3' arm | ||
| 29140 | - | 157982 | 87 | 19.5 | -23.5 | YP_068012 | 5' arm 3' arm | ||
| 29139 | - | 157550 | 90 | 19.5 | -26.8 | YP_068012 | 5' arm 3' arm | ||
| 29144 | - | 159728 | 81 | 19.5 | -30.5 | YP_068012 | 5' arm 3' arm | ||
| 28754 | + | 26838 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
| 28751 | + | 23757 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
| 28737 | + | 8294 | 90 | 19.5 | -20.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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