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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29113 | - | 134378 | 89 | 23 | -29.9 | 5' arm 3' arm | |||
| 28774 | + | 46171 | 88 | 20 | -29.8 | YP_067950 | 5' arm 3' arm | ||
| 28932 | + | 167299 | 90 | 19 | -29.8 | 5' arm 3' arm | |||
| 29083 | - | 111639 | 88 | 20.5 | -29.7 | YP_067987 | 5' arm 3' arm | ||
| 28761 | + | 35308 | 87 | 26.5 | -29.6 | rlcv-mir-rL1-1 | 5' arm | ||
| 29116 | - | 139221 | 90 | 20 | -29.5 | 5' arm 3' arm | |||
| 29119 | - | 142559 | 90 | 21.5 | -29.4 | 5' arm 3' arm | |||
| 29098 | - | 126276 | 89 | 23 | -29.4 | YP_067998 | 5' arm 3' arm | ||
| 29152 | - | 164873 | 88 | 21.5 | -29.3 | YP_068017 | 5' arm 3' arm | ||
| 28888 | + | 142622 | 88 | 24.5 | -29.2 | 5' arm 3' arm | |||
| 29124 | - | 144303 | 85 | 19.5 | -29.1 | 5' arm 3' arm | |||
| 28870 | + | 134290 | 89 | 25 | -29.1 | rlcv-mir-rL1-9 | 3' arm | ||
| 28836 | + | 102536 | 90 | 20 | -29 | YP_067984 | 5' arm 3' arm | ||
| 28936 | - | 4590 | 80 | 19.5 | -28.9 | YP_067940 | 5' arm 3' arm | ||
| 29058 | - | 95765 | 89 | 21 | -28.9 | YP_067977 | 5' arm 3' arm | ||
| 28886 | + | 142269 | 84 | 22.5 | -28.9 | 5' arm 3' arm | |||
| 28887 | + | 142470 | 90 | 22 | -28.9 | 5' arm 3' arm | |||
| 28810 | + | 70195 | 79 | 19.5 | -28.8 | YP_067961 | 5' arm 3' arm | ||
| 28996 | - | 30356 | 85 | 23.5 | -28.8 | 5' arm 3' arm | |||
| 28801 | + | 64443 | 85 | 22 | -28.6 | YP_067957 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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