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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28738 | + | 9290 | 89 | 23 | -32.2 | 5' arm 3' arm | |||
| 28863 | + | 133104 | 90 | 28.5 | -32.2 | rlcv-mir-rL1-3 | 3' arm | ||
| 28841 | + | 109248 | 90 | 21 | -31.6 | YP_067989 | 5' arm 3' arm | ||
| 28784 | + | 49821 | 89 | 22.5 | -31.5 | YP_067950 | 5' arm 3' arm | ||
| 29091 | - | 120917 | 89 | 26 | -31.4 | YP_067995 | 5' arm 3' arm | ||
| 29154 | - | 167327 | 87 | 21.5 | -31.2 | 5' arm 3' arm | |||
| 29047 | - | 86691 | 90 | 21 | -31.1 | YP_067970 | 5' arm 3' arm | ||
| 29064 | - | 97490 | 90 | 20 | -31 | YP_067979 | 5' arm 3' arm | ||
| 28787 | + | 50799 | 90 | 25.5 | -31 | YP_067950 | 5' arm 3' arm | ||
| 28847 | + | 114187 | 89 | 22.5 | -31 | YP_067993 | 5' arm 3' arm | ||
| 28944 | - | 10822 | 89 | 19 | -31 | 5' arm 3' arm | |||
| 28893 | + | 143553 | 90 | 28.5 | -30.9 | 3' arm | |||
| 28757 | + | 30273 | 83 | 22.5 | -30.8 | 5' arm 3' arm | |||
| 28876 | + | 139132 | 89 | 20 | -30.6 | 5' arm 3' arm | |||
| 29144 | - | 159728 | 81 | 19.5 | -30.5 | YP_068012 | 5' arm 3' arm | ||
| 29042 | - | 82189 | 84 | 20.5 | -30.5 | YP_067967 | 5' arm 3' arm | ||
| 29015 | - | 47978 | 86 | 22.5 | -30 | YP_067950 | 5' arm 3' arm | ||
| 29011 | - | 44540 | 90 | 20 | -30 | YP_067950 | 5' arm 3' arm | ||
| 29108 | - | 133188 | 81 | 20 | -30 | 5' arm 3' arm | |||
| 28902 | + | 148614 | 89 | 23 | -30 | YP_068006 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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