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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
29134 | - | 155528 | 89 | 19 | -20 | YP_068010 | 5' arm 3' arm | ||
28815 | + | 74226 | 89 | 20 | -20 | YP_067965 | 5' arm 3' arm | ||
28827 | + | 93693 | 90 | 21.5 | -20.1 | YP_067977 | 5' arm 3' arm | ||
28737 | + | 8294 | 90 | 19.5 | -20.2 | 5' arm 3' arm | |||
28917 | + | 158318 | 88 | 20 | -20.2 | YP_068012 | 5' arm 3' arm | ||
28855 | + | 122865 | 90 | 24 | -20.2 | YP_067997 | 5' arm 3' arm | ||
29002 | - | 32199 | 90 | 19.5 | -20.2 | YP_067943 | 5' arm 3' arm | ||
28898 | + | 146538 | 89 | 22.5 | -20.3 | YP_068005 | 5' arm 3' arm | ||
28879 | + | 140607 | 90 | 31 | -20.3 | 5' arm 3' arm | |||
29090 | - | 120698 | 89 | 19.5 | -20.31 | YP_067995 | 5' arm 3' arm | ||
28813 | + | 73553 | 90 | 22.5 | -20.4 | YP_067965 | 5' arm 3' arm | ||
28943 | - | 9680 | 88 | 19 | -20.4 | 5' arm 3' arm | |||
29014 | - | 47604 | 90 | 20 | -20.4 | YP_067950 | 5' arm 3' arm | ||
28812 | + | 71835 | 90 | 20 | -20.4 | YP_067963 | 5' arm 3' arm | ||
28918 | + | 158726 | 89 | 19.5 | -20.5 | YP_068012 | 5' arm 3' arm | ||
28925 | + | 162236 | 89 | 19.5 | -20.5 | 5' arm 3' arm | |||
28857 | + | 123332 | 90 | 21 | -20.5 | YP_067997 | 5' arm 3' arm | ||
29022 | - | 60580 | 88 | 20 | -20.52 | YP_067954 | 5' arm 3' arm | ||
28782 | + | 48832 | 90 | 20 | -20.6 | YP_067950 | 5' arm 3' arm | ||
28837 | + | 104725 | 90 | 19 | -20.6 | YP_067985 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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