miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29134 - 155528 89 19 -20 YP_068010 5' arm      3' arm
28815 + 74226 89 20 -20 YP_067965 5' arm      3' arm
28827 + 93693 90 21.5 -20.1 YP_067977 5' arm      3' arm
28737 + 8294 90 19.5 -20.2 5' arm      3' arm
28917 + 158318 88 20 -20.2 YP_068012 5' arm      3' arm
28855 + 122865 90 24 -20.2 YP_067997 5' arm      3' arm
29002 - 32199 90 19.5 -20.2 YP_067943 5' arm      3' arm
28898 + 146538 89 22.5 -20.3 YP_068005 5' arm      3' arm
28879 + 140607 90 31 -20.3 5' arm      3' arm
29090 - 120698 89 19.5 -20.31 YP_067995 5' arm      3' arm
28813 + 73553 90 22.5 -20.4 YP_067965 5' arm      3' arm
28943 - 9680 88 19 -20.4 5' arm      3' arm
29014 - 47604 90 20 -20.4 YP_067950 5' arm      3' arm
28812 + 71835 90 20 -20.4 YP_067963 5' arm      3' arm
28918 + 158726 89 19.5 -20.5 YP_068012 5' arm      3' arm
28925 + 162236 89 19.5 -20.5 5' arm      3' arm
28857 + 123332 90 21 -20.5 YP_067997 5' arm      3' arm
29022 - 60580 88 20 -20.52 YP_067954 5' arm      3' arm
28782 + 48832 90 20 -20.6 YP_067950 5' arm      3' arm
28837 + 104725 90 19 -20.6 YP_067985 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.