miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29134	-	155528	89	19	-20	YP_068010		5' arm      3' arm
28815	+	74226	89	20	-20	YP_067965		5' arm      3' arm
28827	+	93693	90	21.5	-20.1	YP_067977		5' arm      3' arm
28917	+	158318	88	20	-20.2	YP_068012		5' arm      3' arm
28737	+	8294	90	19.5	-20.2			5' arm      3' arm
29002	-	32199	90	19.5	-20.2	YP_067943		5' arm      3' arm
28855	+	122865	90	24	-20.2	YP_067997		5' arm      3' arm
28898	+	146538	89	22.5	-20.3	YP_068005		5' arm      3' arm
28879	+	140607	90	31	-20.3			5' arm      3' arm
29090	-	120698	89	19.5	-20.31	YP_067995		5' arm      3' arm
28813	+	73553	90	22.5	-20.4	YP_067965		5' arm      3' arm
28943	-	9680	88	19	-20.4			5' arm      3' arm
28812	+	71835	90	20	-20.4	YP_067963		5' arm      3' arm
29014	-	47604	90	20	-20.4	YP_067950		5' arm      3' arm
28857	+	123332	90	21	-20.5	YP_067997		5' arm      3' arm
28918	+	158726	89	19.5	-20.5	YP_068012		5' arm      3' arm
28925	+	162236	89	19.5	-20.5			5' arm      3' arm
29022	-	60580	88	20	-20.52	YP_067954		5' arm      3' arm
28782	+	48832	90	20	-20.6	YP_067950		5' arm      3' arm
28837	+	104725	90	19	-20.6	YP_067985		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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