miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28814 + 73839 86 21 -28.5 5' arm      3' arm
28736 + 8056 89 28.5 -22.5 5' arm      3' arm
28865 + 133546 87 25 -25 rlcv-mir-rL1-5 5' arm      3' arm
28873 + 134712 89 29 -28 5' arm      3' arm
28870 + 134290 89 25 -29.1 rlcv-mir-rL1-9       3' arm
28868 + 134008 89 25.5 -27.4 rlcv-mir-rL1-8 5' arm      
28853 + 119275 89 23.5 -27.3 5' arm      3' arm
28866 + 133683 81 26 -23.3 rlcv-mir-rL1-6 5' arm      3' arm
28863 + 133104 90 28.5 -32.2 rlcv-mir-rL1-3       3' arm
28832 + 98903 88 19.5 -33.6 5' arm      3' arm
28852 + 119089 87 21.5 -19.8 5' arm      3' arm
28734 + 7603 90 24 -26.8 5' arm      3' arm
28738 + 9290 89 23 -32.2 5' arm      3' arm
28735 + 7964 86 21 -21 5' arm      3' arm
28737 + 8294 90 19.5 -20.2 5' arm      3' arm
28739 + 9505 84 23.5 -21.7 5' arm      3' arm
28740 + 12987 88 22 -24.5 5' arm      3' arm
28741 + 14130 90 24.5 -25.1 5' arm      3' arm
28744 + 17211 90 24.5 -25.1 5' arm      3' arm
28743 + 16068 88 22 -24.5 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.