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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28921 | + | 160290 | 88 | 20.5 | -22 | YP_068012 | 5' arm 3' arm | ||
| 28920 | + | 160155 | 89 | 19 | -21.4 | YP_068012 | 5' arm 3' arm | ||
| 28917 | + | 158318 | 88 | 20 | -20.2 | YP_068012 | 5' arm 3' arm | ||
| 28918 | + | 158726 | 89 | 19.5 | -20.5 | YP_068012 | 5' arm 3' arm | ||
| 29136 | - | 156583 | 86 | 19 | -21.3 | YP_068011 | 5' arm 3' arm | ||
| 28916 | + | 156337 | 89 | 19 | -24.4 | YP_068011 | 5' arm 3' arm | ||
| 28913 | + | 155058 | 88 | 20 | -21.3 | YP_068010 | 5' arm 3' arm | ||
| 28915 | + | 155662 | 87 | 23 | -27.4 | YP_068010 | 5' arm 3' arm | ||
| 29133 | - | 155322 | 87 | 19 | -22.4 | YP_068010 | 5' arm 3' arm | ||
| 29134 | - | 155528 | 89 | 19 | -20 | YP_068010 | 5' arm 3' arm | ||
| 28914 | + | 155381 | 87 | 21.5 | -25.1 | YP_068010 | 5' arm 3' arm | ||
| 29135 | - | 156127 | 90 | 20.5 | -26.3 | YP_068010 | 5' arm 3' arm | ||
| 28907 | + | 152362 | 86 | 19.5 | -19.4 | YP_068009 | 5' arm 3' arm | ||
| 28911 | + | 154678 | 90 | 23 | -21.6 | YP_068009 | 5' arm 3' arm | ||
| 28909 | + | 153469 | 90 | 21.5 | -21 | YP_068009 | 5' arm 3' arm | ||
| 29132 | - | 152716 | 90 | 19.5 | -24.1 | YP_068009 | 5' arm 3' arm | ||
| 28910 | + | 153898 | 90 | 23 | -27 | YP_068009 | 5' arm 3' arm | ||
| 28908 | + | 153336 | 90 | 19.5 | -26 | YP_068009 | 5' arm 3' arm | ||
| 28912 | + | 154774 | 90 | 21.5 | -27.5 | YP_068009 | 5' arm 3' arm | ||
| 29131 | - | 151908 | 88 | 22.5 | -28.2 | YP_068008 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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