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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29152 | - | 164873 | 88 | 21.5 | -29.3 | YP_068017 | 5' arm 3' arm | ||
| 29153 | - | 166240 | 90 | 20 | -24.4 | YP_068017 | 5' arm 3' arm | ||
| 28928 | + | 164439 | 90 | 19.5 | -22.6 | YP_068017 | 5' arm 3' arm | ||
| 28930 | + | 166150 | 90 | 19.5 | -24.2 | YP_068017 | 5' arm 3' arm | ||
| 28927 | + | 164346 | 90 | 21.5 | -19.5 | YP_068017 | 5' arm 3' arm | ||
| 28929 | + | 164539 | 88 | 22.5 | -21.8 | YP_068017 | 5' arm 3' arm | ||
| 29151 | - | 164759 | 90 | 25.5 | -19.8 | YP_068017 | 5' arm 3' arm | ||
| 29150 | - | 164646 | 85 | 19 | -19.64 | YP_068017 | 5' arm 3' arm | ||
| 29147 | - | 161633 | 80 | 19.5 | -24.3 | YP_068014 | 5' arm 3' arm | ||
| 28922 | + | 160728 | 89 | 21.5 | -27.6 | YP_068013 | 5' arm 3' arm | ||
| 29146 | - | 160860 | 84 | 20 | -28.5 | YP_068013 | 5' arm 3' arm | ||
| 29145 | - | 160643 | 90 | 19 | -21.89 | YP_068013 | 5' arm 3' arm | ||
| 29144 | - | 159728 | 81 | 19.5 | -30.5 | YP_068012 | 5' arm 3' arm | ||
| 29143 | - | 159604 | 90 | 19.5 | -24 | YP_068012 | 5' arm 3' arm | ||
| 29139 | - | 157550 | 90 | 19.5 | -26.8 | YP_068012 | 5' arm 3' arm | ||
| 28917 | + | 158318 | 88 | 20 | -20.2 | YP_068012 | 5' arm 3' arm | ||
| 28919 | + | 159644 | 89 | 21.5 | -22 | YP_068012 | 5' arm 3' arm | ||
| 28921 | + | 160290 | 88 | 20.5 | -22 | YP_068012 | 5' arm 3' arm | ||
| 29140 | - | 157982 | 87 | 19.5 | -23.5 | YP_068012 | 5' arm 3' arm | ||
| 28918 | + | 158726 | 89 | 19.5 | -20.5 | YP_068012 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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