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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28823 | + | 89446 | 86 | 22.5 | -36.4 | YP_067972 | 5' arm 3' arm | ||
29065 | - | 98990 | 90 | 21 | -36 | 5' arm 3' arm | |||
28878 | + | 140343 | 88 | 27 | -34.9 | 5' arm 3' arm | |||
28769 | + | 41576 | 88 | 21.5 | -34.7 | YP_067948 | 5' arm 3' arm | ||
29021 | - | 57390 | 88 | 23 | -34.7 | YP_067952 | 5' arm 3' arm | ||
28885 | + | 141820 | 84 | 27 | -34.4 | rlcv-mir-rL1-13 | 3' arm | ||
29149 | - | 162181 | 89 | 20 | -34.1 | 5' arm 3' arm | |||
28803 | + | 65199 | 90 | 32.5 | -33.7 | YP_067957 | 5' arm 3' arm | ||
28942 | - | 9372 | 79 | 23.5 | -33.7 | 5' arm 3' arm | |||
28832 | + | 98903 | 88 | 19.5 | -33.6 | 5' arm 3' arm | |||
28896 | + | 146148 | 90 | 22.5 | -33.5 | YP_068004 | 5' arm 3' arm | ||
29117 | - | 141421 | 89 | 28.5 | -33.1 | 3' arm | |||
29085 | - | 113283 | 79 | 21 | -32.7 | YP_067992 | 5' arm 3' arm | ||
28990 | - | 28105 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
28982 | - | 25024 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
28973 | - | 21943 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
28947 | - | 12699 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
28955 | - | 15781 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
28964 | - | 18862 | 89 | 23.5 | -32.61 | 5' arm 3' arm | |||
28861 | + | 128355 | 88 | 20 | -32.5 | YP_068000 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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