miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28823 + 89446 86 22.5 -36.4 YP_067972 5' arm      3' arm
29065 - 98990 90 21 -36 5' arm      3' arm
28878 + 140343 88 27 -34.9 5' arm      3' arm
28769 + 41576 88 21.5 -34.7 YP_067948 5' arm      3' arm
29021 - 57390 88 23 -34.7 YP_067952 5' arm      3' arm
28885 + 141820 84 27 -34.4 rlcv-mir-rL1-13       3' arm
29149 - 162181 89 20 -34.1 5' arm      3' arm
28803 + 65199 90 32.5 -33.7 YP_067957 5' arm      3' arm
28942 - 9372 79 23.5 -33.7 5' arm      3' arm
28832 + 98903 88 19.5 -33.6 5' arm      3' arm
28896 + 146148 90 22.5 -33.5 YP_068004 5' arm      3' arm
29117 - 141421 89 28.5 -33.1       3' arm
29085 - 113283 79 21 -32.7 YP_067992 5' arm      3' arm
28990 - 28105 89 23.5 -32.61 5' arm      3' arm
28982 - 25024 89 23.5 -32.61 5' arm      3' arm
28973 - 21943 89 23.5 -32.61 5' arm      3' arm
28947 - 12699 89 23.5 -32.61 5' arm      3' arm
28955 - 15781 89 23.5 -32.61 5' arm      3' arm
28964 - 18862 89 23.5 -32.61 5' arm      3' arm
28861 + 128355 88 20 -32.5 YP_068000 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.