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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29067 | - | 99852 | 90 | 21 | -19.4 | YP_067981 | 5' arm 3' arm | ||
| 28811 | + | 70756 | 87 | 20 | -19.4 | YP_067962 | 5' arm 3' arm | ||
| 28907 | + | 152362 | 86 | 19.5 | -19.4 | YP_068009 | 5' arm 3' arm | ||
| 29061 | - | 96831 | 89 | 20 | -19.4 | YP_067978 | 5' arm 3' arm | ||
| 29059 | - | 96065 | 89 | 20 | -19.5 | YP_067978 | 5' arm 3' arm | ||
| 28927 | + | 164346 | 90 | 21.5 | -19.5 | YP_068017 | 5' arm 3' arm | ||
| 29063 | - | 97375 | 90 | 20.5 | -19.5 | YP_067978 | 5' arm 3' arm | ||
| 28897 | + | 146358 | 90 | 19.5 | -19.5 | YP_068005 | 5' arm 3' arm | ||
| 28829 | + | 94943 | 90 | 19.5 | -19.5 | YP_067977 | 5' arm 3' arm | ||
| 29073 | - | 104530 | 88 | 20.5 | -19.6 | YP_067985 | 5' arm 3' arm | ||
| 29150 | - | 164646 | 85 | 19 | -19.64 | YP_068017 | 5' arm 3' arm | ||
| 28819 | + | 86688 | 86 | 20.5 | -19.7 | YP_067970 | 5' arm 3' arm | ||
| 29106 | - | 130411 | 89 | 22 | -19.7 | YP_068001 | 5' arm 3' arm | ||
| 28786 | + | 50558 | 90 | 21 | -19.7 | YP_067950 | 5' arm 3' arm | ||
| 28852 | + | 119089 | 87 | 21.5 | -19.8 | 5' arm 3' arm | |||
| 29024 | - | 61433 | 89 | 22 | -19.8 | YP_067955 | 5' arm 3' arm | ||
| 29077 | - | 106499 | 89 | 19 | -19.8 | YP_067986 | 5' arm 3' arm | ||
| 29151 | - | 164759 | 90 | 25.5 | -19.8 | YP_068017 | 5' arm 3' arm | ||
| 29110 | - | 133946 | 89 | 25 | -19.9 | 5' arm 3' arm | |||
| 29134 | - | 155528 | 89 | 19 | -20 | YP_068010 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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