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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28792 | + | 53958 | 89 | 19 | -27.3 | YP_067951 | 5' arm 3' arm | ||
| 28844 | + | 111981 | 86 | 19 | -25.3 | YP_067991 | 5' arm 3' arm | ||
| 28806 | + | 66576 | 87 | 19 | -21.4 | YP_067958 | 5' arm 3' arm | ||
| 28854 | + | 119878 | 87 | 19 | -21.04 | YP_067995 | 5' arm 3' arm | ||
| 28916 | + | 156337 | 89 | 19 | -24.4 | YP_068011 | 5' arm 3' arm | ||
| 28899 | + | 146687 | 90 | 19 | -25.7 | YP_068005 | 5' arm 3' arm | ||
| 28778 | + | 47442 | 86 | 19 | -24.5 | YP_067950 | 5' arm 3' arm | ||
| 28920 | + | 160155 | 89 | 19 | -21.4 | YP_068012 | 5' arm 3' arm | ||
| 28800 | + | 63452 | 89 | 19 | -23.9 | YP_067956 | 5' arm 3' arm | ||
| 28837 | + | 104725 | 90 | 19 | -20.6 | YP_067985 | 5' arm 3' arm | ||
| 28730 | + | 3858 | 90 | 19 | -22.2 | YP_067940 | 5' arm 3' arm | ||
| 28770 | + | 41892 | 88 | 19 | -23.1 | YP_067948 | 5' arm 3' arm | ||
| 28773 | + | 44836 | 87 | 19 | -20.8 | YP_067950 | 5' arm 3' arm | ||
| 28795 | + | 58915 | 81 | 19 | -24.9 | YP_067953 | 5' arm 3' arm | ||
| 28724 | + | 684 | 89 | 19 | -20.8 | YP_067938 | 5' arm 3' arm | ||
| 28725 | + | 1817 | 85 | 19 | -23.6 | YP_067940 | 5' arm 3' arm | ||
| 28726 | + | 2253 | 87 | 19 | -21.11 | YP_067940 | 5' arm 3' arm | ||
| 28728 | + | 2793 | 90 | 19 | -24.3 | YP_067940 | 5' arm 3' arm | ||
| 28729 | + | 3681 | 88 | 19 | -22.4 | YP_067940 | 5' arm 3' arm | ||
| 28883 | + | 141443 | 90 | 19 | -28.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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