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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29131 | - | 151908 | 88 | 22.5 | -28.2 | YP_068008 | 5' arm 3' arm | ||
| 28906 | + | 150282 | 90 | 22 | -23.1 | YP_068007 | 5' arm 3' arm | ||
| 29130 | - | 151701 | 89 | 19 | -28.1 | YP_068007 | 5' arm 3' arm | ||
| 29128 | - | 149679 | 82 | 19 | -26.5 | YP_068007 | 5' arm 3' arm | ||
| 28905 | + | 149307 | 89 | 22 | -25.5 | YP_068007 | 5' arm 3' arm | ||
| 28901 | + | 148279 | 90 | 19.5 | -20.8 | YP_068006 | 5' arm 3' arm | ||
| 28900 | + | 148112 | 90 | 20 | -23.4 | YP_068006 | 5' arm 3' arm | ||
| 29127 | - | 148701 | 87 | 20.5 | -23.9 | YP_068006 | 5' arm 3' arm | ||
| 28902 | + | 148614 | 89 | 23 | -30 | YP_068006 | 5' arm 3' arm | ||
| 29126 | - | 146847 | 90 | 20.5 | -21.1 | YP_068005 | 5' arm 3' arm | ||
| 28897 | + | 146358 | 90 | 19.5 | -19.5 | YP_068005 | 5' arm 3' arm | ||
| 28899 | + | 146687 | 90 | 19 | -25.7 | YP_068005 | 5' arm 3' arm | ||
| 28898 | + | 146538 | 89 | 22.5 | -20.3 | YP_068005 | 5' arm 3' arm | ||
| 28896 | + | 146148 | 90 | 22.5 | -33.5 | YP_068004 | 5' arm 3' arm | ||
| 28862 | + | 131753 | 89 | 22.5 | -27.3 | YP_068002 | 5' arm 3' arm | ||
| 29107 | - | 131020 | 90 | 23 | -26.6 | YP_068001 | 5' arm 3' arm | ||
| 29106 | - | 130411 | 89 | 22 | -19.7 | YP_068001 | 5' arm 3' arm | ||
| 29105 | - | 129747 | 90 | 23.5 | -26.8 | YP_068001 | 5' arm 3' arm | ||
| 29102 | - | 128507 | 89 | 21 | -23.7 | YP_068000 | 5' arm 3' arm | ||
| 28861 | + | 128355 | 88 | 20 | -32.5 | YP_068000 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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