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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28765 | + | 38540 | 88 | 23.5 | -22.3 | YP_067946 | 5' arm 3' arm | ||
28736 | + | 8056 | 89 | 28.5 | -22.5 | 5' arm 3' arm | |||
28733 | + | 4703 | 90 | 21.5 | -23.5 | YP_067940 | 5' arm 3' arm | ||
28731 | + | 4212 | 88 | 21 | -23.3 | YP_067940 | 5' arm 3' arm | ||
28732 | + | 4482 | 87 | 20.5 | -24.1 | YP_067940 | 5' arm 3' arm | ||
28724 | + | 684 | 89 | 19 | -20.8 | YP_067938 | 5' arm 3' arm | ||
28725 | + | 1817 | 85 | 19 | -23.6 | YP_067940 | 5' arm 3' arm | ||
28726 | + | 2253 | 87 | 19 | -21.11 | YP_067940 | 5' arm 3' arm | ||
28728 | + | 2793 | 90 | 19 | -24.3 | YP_067940 | 5' arm 3' arm | ||
28729 | + | 3681 | 88 | 19 | -22.4 | YP_067940 | 5' arm 3' arm | ||
28730 | + | 3858 | 90 | 19 | -22.2 | YP_067940 | 5' arm 3' arm | ||
28727 | + | 2465 | 88 | 21.5 | -25.3 | YP_067940 | 5' arm 3' arm | ||
28734 | + | 7603 | 90 | 24 | -26.8 | 5' arm 3' arm | |||
28738 | + | 9290 | 89 | 23 | -32.2 | 5' arm 3' arm | |||
28735 | + | 7964 | 86 | 21 | -21 | 5' arm 3' arm | |||
28737 | + | 8294 | 90 | 19.5 | -20.2 | 5' arm 3' arm | |||
28739 | + | 9505 | 84 | 23.5 | -21.7 | 5' arm 3' arm | |||
28740 | + | 12987 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28741 | + | 14130 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28744 | + | 17211 | 90 | 24.5 | -25.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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