miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28765 + 38540 88 23.5 -22.3 YP_067946 5' arm      3' arm
28736 + 8056 89 28.5 -22.5 5' arm      3' arm
28733 + 4703 90 21.5 -23.5 YP_067940 5' arm      3' arm
28731 + 4212 88 21 -23.3 YP_067940 5' arm      3' arm
28732 + 4482 87 20.5 -24.1 YP_067940 5' arm      3' arm
28724 + 684 89 19 -20.8 YP_067938 5' arm      3' arm
28725 + 1817 85 19 -23.6 YP_067940 5' arm      3' arm
28726 + 2253 87 19 -21.11 YP_067940 5' arm      3' arm
28728 + 2793 90 19 -24.3 YP_067940 5' arm      3' arm
28729 + 3681 88 19 -22.4 YP_067940 5' arm      3' arm
28730 + 3858 90 19 -22.2 YP_067940 5' arm      3' arm
28727 + 2465 88 21.5 -25.3 YP_067940 5' arm      3' arm
28734 + 7603 90 24 -26.8 5' arm      3' arm
28738 + 9290 89 23 -32.2 5' arm      3' arm
28735 + 7964 86 21 -21 5' arm      3' arm
28737 + 8294 90 19.5 -20.2 5' arm      3' arm
28739 + 9505 84 23.5 -21.7 5' arm      3' arm
28740 + 12987 88 22 -24.5 5' arm      3' arm
28741 + 14130 90 24.5 -25.1 5' arm      3' arm
28744 + 17211 90 24.5 -25.1 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.