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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28945 | - | 10956 | 90 | 22.5 | -21 | 5' arm 3' arm | |||
| 29032 | - | 69606 | 88 | 19 | -21 | YP_067960 | 5' arm 3' arm | ||
| 28834 | + | 101302 | 89 | 23 | -21 | YP_067982 | 5' arm 3' arm | ||
| 29050 | - | 92133 | 90 | 21 | -21 | YP_067975 | 5' arm 3' arm | ||
| 28854 | + | 119878 | 87 | 19 | -21.04 | YP_067995 | 5' arm 3' arm | ||
| 28963 | - | 18530 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 28946 | - | 12367 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 28981 | - | 24692 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 28989 | - | 27773 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 28972 | - | 21611 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 29126 | - | 146847 | 90 | 20.5 | -21.1 | YP_068005 | 5' arm 3' arm | ||
| 28954 | - | 15449 | 90 | 20 | -21.1 | 5' arm 3' arm | |||
| 29001 | - | 32056 | 89 | 22 | -21.1 | YP_067943 | 5' arm 3' arm | ||
| 29055 | - | 93528 | 90 | 21 | -21.1 | YP_067977 | 5' arm 3' arm | ||
| 29031 | - | 69374 | 88 | 19 | -21.1 | YP_067960 | 5' arm 3' arm | ||
| 28726 | + | 2253 | 87 | 19 | -21.11 | YP_067940 | 5' arm 3' arm | ||
| 28904 | + | 149190 | 90 | 19.5 | -21.16 | 5' arm 3' arm | |||
| 28835 | + | 101668 | 85 | 20 | -21.2 | YP_067982 | 5' arm 3' arm | ||
| 28845 | + | 112590 | 88 | 24.5 | -21.2 | YP_067991 | 5' arm 3' arm | ||
| 28872 | + | 134579 | 81 | 21.5 | -21.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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