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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15767 | + | 88783 | 89 | 21.5 | -29.8 | 5' arm 3' arm | |||
| 15898 | + | 195433 | 89 | 20.5 | -29.8 | YP_214139 | 5' arm 3' arm | ||
| 15879 | + | 174809 | 86 | 20.5 | -29.8 | 5' arm 3' arm | |||
| 15720 | + | 57386 | 90 | 25 | -29.7 | 5' arm 3' arm | |||
| 15750 | + | 75370 | 87 | 19.5 | -29.7 | YP_214062 | 5' arm 3' arm | ||
| 15781 | + | 96307 | 88 | 22 | -29.6 | YP_214071 | 5' arm 3' arm | ||
| 16236 | - | 230023 | 89 | 21.5 | -29.6 | YP_214170 | 5' arm 3' arm | ||
| 15856 | + | 149181 | 90 | 23 | -29.6 | YP_214104 | 5' arm 3' arm | ||
| 16172 | - | 170923 | 89 | 23 | -29.5 | YP_214113 | 5' arm 3' arm | ||
| 15887 | + | 186707 | 90 | 19 | -29.5 | YP_214129 | 5' arm 3' arm | ||
| 15938 | - | 7449 | 81 | 23 | -29.5 | 5' arm 3' arm | |||
| 16177 | - | 176367 | 89 | 22 | -29.41 | YP_214122 | 5' arm 3' arm | ||
| 16051 | - | 81755 | 86 | 20.5 | -29.4 | 5' arm 3' arm | |||
| 15963 | - | 30907 | 87 | 21.5 | -29.3 | YP_214038 | 5' arm 3' arm | ||
| 15986 | - | 44141 | 88 | 22 | -29.2 | YP_214047 | 5' arm 3' arm | ||
| 15970 | - | 33790 | 86 | 23.5 | -29.1 | YP_214040 | 5' arm 3' arm | ||
| 16013 | - | 62116 | 84 | 20.5 | -29 | YP_214057 | 5' arm 3' arm | ||
| 15734 | + | 63375 | 88 | 23 | -29 | YP_214059 | 5' arm 3' arm | ||
| 15704 | + | 47340 | 89 | 19.5 | -28.9 | YP_214048 | 5' arm 3' arm | ||
| 15956 | - | 26949 | 88 | 24 | -28.9 | YP_214034 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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