miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
21716071 NC_004065.1 Murid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16071 - 92932 90 23 -32.1 5' arm      3' arm
15974 - 35477 90 20 -32.1 YP_214041 5' arm      3' arm
16148 - 146951 90 19 -32.1 YP_214102 5' arm      3' arm
15778 + 94477 86 23.5 -32.1 5' arm      3' arm
15925 + 224577 90 20.5 -31.6 YP_214166 5' arm      3' arm
16165 - 163396 88 20 -31.6 5' arm      3' arm
15858 + 149779 90 21 -31.5 YP_214104 5' arm      3' arm
15848 + 142816 90 21.5 -31.5 YP_214099 5' arm      3' arm
15988 - 44648 84 21 -31.5 YP_214047 5' arm      3' arm
15933 - 653 90 28 -31.46 YP_214009 5' arm      3' arm
15884 + 183024 83 26 -30.7 5' arm      3' arm
15763 + 82600 88 19 -30.7 5' arm      3' arm
15802 + 114658 89 20.5 -30.5 YP_214083 5' arm      3' arm
15966 - 32331 84 21 -30.3 YP_214040 5' arm      3' arm
15670 + 18045 90 24.5 -30.3 YP_214026 5' arm      3' arm
15931 + 229484 85 20.5 -30.1 YP_214170 5' arm      3' arm
15735 + 64331 88 21 -30.1 5' arm      3' arm
15829 + 131305 90 26 -30 YP_214089 5' arm      3' arm
15689 + 31255 88 19 -29.9 YP_214037 5' arm      3' arm
15767 + 88783 89 21.5 -29.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.