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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15678 | + | 24874 | 88 | 22 | -24.5 | YP_214031 | 5' arm 3' arm | ||
| 15679 | + | 25571 | 87 | 21 | -25 | YP_214033 | 5' arm 3' arm | ||
| 15680 | + | 25904 | 90 | 21 | -21.5 | YP_214033 | 5' arm 3' arm | ||
| 15681 | + | 27507 | 90 | 20 | -26.5 | YP_214034 | 5' arm 3' arm | ||
| 15682 | + | 28325 | 90 | 19 | -20 | YP_214034 | 5' arm 3' arm | ||
| 15683 | + | 28489 | 90 | 19.5 | -19.5 | YP_214034 | 5' arm 3' arm | ||
| 15684 | + | 29086 | 88 | 20 | -22.9 | YP_214036 | 5' arm 3' arm | ||
| 15685 | + | 29360 | 89 | 19.5 | -20.4 | YP_214035 | 5' arm 3' arm | ||
| 15686 | + | 29471 | 89 | 19.5 | -23.5 | YP_214035 | 5' arm 3' arm | ||
| 15687 | + | 29907 | 90 | 20 | -21.2 | YP_214036 | 5' arm 3' arm | ||
| 15688 | + | 30371 | 86 | 19.5 | -27.2 | YP_214035 | 5' arm 3' arm | ||
| 15689 | + | 31255 | 88 | 19 | -29.9 | YP_214037 | 5' arm 3' arm | ||
| 15690 | + | 32636 | 88 | 23 | -22 | YP_214040 | 5' arm 3' arm | ||
| 15691 | + | 33703 | 90 | 27 | -36.6 | YP_214040 | 5' arm 3' arm | ||
| 15692 | + | 35643 | 90 | 23 | -28.6 | YP_214041 | 5' arm 3' arm | ||
| 15693 | + | 37903 | 89 | 20.5 | -24.2 | YP_214045 | 5' arm 3' arm | ||
| 15694 | + | 38502 | 82 | 20.5 | -21.73 | YP_214045 | 5' arm 3' arm | ||
| 15695 | + | 39571 | 89 | 21.5 | -20.8 | YP_214046 | 5' arm 3' arm | ||
| 15696 | + | 40640 | 90 | 20.5 | -21.8 | YP_214046 | 5' arm 3' arm | ||
| 15697 | + | 40796 | 88 | 24.5 | -21.3 | YP_214046 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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