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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15671 | + | 18554 | 90 | 21 | -37.4 | YP_214026 | 5' arm 3' arm | ||
| 15691 | + | 33703 | 90 | 27 | -36.6 | YP_214040 | 5' arm 3' arm | ||
| 16074 | - | 94561 | 84 | 22.5 | -36.5 | 5' arm 3' arm | |||
| 16134 | - | 140261 | 90 | 19 | -35.9 | YP_214098 | 5' arm 3' arm | ||
| 15738 | + | 67724 | 89 | 24.5 | -35.36 | 5' arm 3' arm | |||
| 15717 | + | 55947 | 89 | 21.5 | -35.2 | YP_214055 | 5' arm 3' arm | ||
| 16072 | - | 93097 | 86 | 25 | -35 | 5' arm 3' arm | |||
| 16018 | - | 64498 | 81 | 23 | -34.7 | 5' arm 3' arm | |||
| 16161 | - | 162147 | 90 | 25 | -34.6 | YP_214107 | 5' arm 3' arm | ||
| 15865 | + | 162062 | 86 | 25.5 | -34.6 | YP_214107 | 5' arm 3' arm | ||
| 15739 | + | 68185 | 90 | 22.5 | -34.5 | 5' arm 3' arm | |||
| 15928 | + | 225554 | 88 | 22 | -34.2 | 5' arm 3' arm | |||
| 15869 | + | 164352 | 79 | 20.5 | -34 | 5' arm 3' arm | |||
| 16030 | - | 68465 | 89 | 19 | -33.6 | 5' arm 3' arm | |||
| 16002 | - | 53648 | 86 | 22.5 | -33.1 | YP_214052 | 5' arm 3' arm | ||
| 15845 | + | 142110 | 89 | 25.5 | -32.7 | YP_214099 | 5' arm 3' arm | ||
| 16019 | - | 64737 | 88 | 24.5 | -32.6 | 5' arm 3' arm | |||
| 16127 | - | 135561 | 80 | 21.5 | -32.5 | YP_214093 | 5' arm 3' arm | ||
| 15885 | + | 184395 | 85 | 25 | -32.5 | 5' arm 3' arm | |||
| 15880 | + | 176279 | 89 | 22.5 | -32.42 | YP_214122 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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