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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15785 | + | 97547 | 90 | 19.5 | -19.4 | YP_214071 | 5' arm 3' arm | ||
| 15868 | + | 164248 | 89 | 19.5 | -19.4 | 5' arm 3' arm | |||
| 15798 | + | 109545 | 87 | 19.5 | -19.4 | YP_214080 | 5' arm 3' arm | ||
| 16192 | - | 191592 | 90 | 20 | -19.4 | YP_214137 | 5' arm 3' arm | ||
| 15819 | + | 124258 | 90 | 21 | -19.4 | 5' arm 3' arm | |||
| 15895 | + | 194289 | 88 | 19 | -19.5 | YP_214139 | 5' arm 3' arm | ||
| 15918 | + | 213749 | 87 | 20.5 | -19.5 | YP_214154 | 5' arm 3' arm | ||
| 15683 | + | 28489 | 90 | 19.5 | -19.5 | YP_214034 | 5' arm 3' arm | ||
| 15723 | + | 58277 | 90 | 20.5 | -19.6 | YP_214056 | 5' arm 3' arm | ||
| 15833 | + | 134738 | 87 | 19 | -19.6 | YP_214093 | 5' arm 3' arm | ||
| 16029 | - | 68274 | 90 | 19.5 | -19.6 | 5' arm 3' arm | |||
| 15793 | + | 104133 | 87 | 21 | -19.6 | YP_214075 | 5' arm 3' arm | ||
| 16117 | - | 126234 | 90 | 20 | -19.6 | 5' arm 3' arm | |||
| 15939 | - | 8123 | 89 | 26 | -19.6 | YP_214016 | 5' arm 3' arm | ||
| 15978 | - | 37768 | 89 | 21.5 | -19.6 | YP_214045 | 5' arm 3' arm | ||
| 16235 | - | 229828 | 90 | 21.5 | -19.6 | YP_214170 | 5' arm 3' arm | ||
| 15905 | + | 199388 | 90 | 20 | -19.7 | 5' arm 3' arm | |||
| 15729 | + | 61788 | 88 | 20 | -19.7 | YP_214057 | 5' arm 3' arm | ||
| 15726 | + | 59637 | 89 | 20.5 | -19.7 | YP_214057 | 5' arm 3' arm | ||
| 16116 | - | 126118 | 88 | 20 | -19.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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