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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11055 | - | 98718 | 84 | 19.5 | -29.1 | NP_116409 | 5' arm 3' arm | ||
| 10880 | + | 168366 | 89 | 25.5 | -29.1 | NP_116457 | 5' arm 3' arm | ||
| 10928 | - | 15999 | 90 | 21.5 | -29 | 5' arm 3' arm | |||
| 10768 | + | 97220 | 81 | 23.5 | -29 | NP_116409 | 5' arm 3' arm | ||
| 10858 | + | 156972 | 87 | 21.5 | -29 | NP_116448 | 5' arm 3' arm | ||
| 10745 | + | 66107 | 90 | 22.5 | -28.94 | NP_116390 | 5' arm 3' arm | ||
| 10758 | + | 86006 | 88 | 19.5 | -28.9 | 5' arm 3' arm | |||
| 11033 | - | 90534 | 89 | 20 | -28.9 | NP_116406 | 5' arm 3' arm | ||
| 11022 | - | 84484 | 90 | 20.5 | -28.8 | NP_116401 | 5' arm 3' arm | ||
| 11024 | - | 85113 | 85 | 20 | -28.8 | NP_116401 | 5' arm 3' arm | ||
| 10721 | + | 33616 | 86 | 20.5 | -28.8 | NP_116360 | 5' arm 3' arm | ||
| 10751 | + | 74419 | 90 | 21.5 | -28.8 | NP_116398 | 5' arm 3' arm | ||
| 10714 | + | 14470 | 89 | 19 | -28.8 | NP_116340 | 5' arm 3' arm | ||
| 10793 | + | 116257 | 90 | 21 | -28.7 | NP_116420 | 5' arm 3' arm | ||
| 10964 | - | 53248 | 90 | 23 | -28.5 | NP_116380 | 5' arm 3' arm | ||
| 10711 | + | 10567 | 90 | 21.5 | -28.5 | NP_116336 | 5' arm 3' arm | ||
| 11047 | - | 95654 | 90 | 21.5 | -28.4 | NP_116408 | 5' arm 3' arm | ||
| 11092 | - | 132032 | 90 | 19.5 | -28.4 | NP_116432 | 5' arm 3' arm | ||
| 10896 | + | 180707 | 86 | 19 | -28.4 | 5' arm 3' arm | |||
| 11042 | - | 93644 | 87 | 21 | -28.2 | NP_116408 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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