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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11115 | - | 157060 | 90 | 22 | -31.5 | NP_116448 | 5' arm 3' arm | ||
| 10727 | + | 42680 | 90 | 19.5 | -31 | NP_116370 | 5' arm 3' arm | ||
| 10868 | + | 162686 | 90 | 19 | -31 | NP_116453 | 5' arm 3' arm | ||
| 10715 | + | 14599 | 86 | 26.5 | -30.9 | NP_116339 | 5' arm 3' arm | ||
| 11117 | - | 160382 | 90 | 19.5 | -30.7 | NP_116452 | 5' arm 3' arm | ||
| 10702 | + | 3818 | 87 | 22.5 | -30.5 | NP_116331 | 5' arm 3' arm | ||
| 10755 | + | 82373 | 90 | 19 | -30.5 | NP_116401 | 5' arm 3' arm | ||
| 10811 | + | 127411 | 90 | 19.5 | -30.4 | NP_116430 | 5' arm 3' arm | ||
| 11140 | - | 187607 | 86 | 19.5 | -30.4 | NP_116478 | 5' arm 3' arm | ||
| 11074 | - | 107083 | 88 | 24 | -30.3 | 5' arm 3' arm | |||
| 10814 | + | 130010 | 88 | 21 | -30.2 | NP_116431 | 5' arm 3' arm | ||
| 11050 | - | 97306 | 90 | 22.5 | -29.8 | NP_116409 | 5' arm 3' arm | ||
| 10699 | + | 2329 | 88 | 22 | -29.7 | NP_116331 | 5' arm 3' arm | ||
| 10908 | + | 188830 | 86 | 22.5 | -29.7 | NP_116479 | 5' arm 3' arm | ||
| 11056 | - | 98924 | 89 | 23 | -29.7 | NP_116409 | 5' arm 3' arm | ||
| 10919 | - | 6368 | 89 | 22.5 | -29.6 | NP_116333 | 5' arm 3' arm | ||
| 10736 | + | 49657 | 89 | 22 | -29.5 | NP_116378 | 5' arm 3' arm | ||
| 10895 | + | 180607 | 88 | 21 | -29.5 | 5' arm 3' arm | |||
| 11077 | - | 108415 | 90 | 19.5 | -29.3 | 5' arm 3' arm | |||
| 10917 | + | 195781 | 79 | 21.5 | -29.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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