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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10979 | - | 60350 | 88 | 26 | -36.9 | NP_116385 | 5' arm 3' arm | ||
| 10847 | + | 147771 | 87 | 20.5 | -36.3 | NP_116443 | 5' arm 3' arm | ||
| 10930 | - | 16647 | 89 | 25.5 | -36.2 | NP_116344 | 5' arm 3' arm | ||
| 10716 | + | 17253 | 89 | 24.5 | -35.7 | 5' arm 3' arm | |||
| 10884 | + | 173017 | 89 | 29 | -35.5 | NP_116464 | 5' arm 3' arm | ||
| 11027 | - | 86114 | 90 | 21 | -34.9 | 5' arm 3' arm | |||
| 10887 | + | 174782 | 89 | 24 | -33.9 | NP_116465 | 5' arm 3' arm | ||
| 10815 | + | 130453 | 87 | 21 | -33.5 | NP_116432 | 5' arm 3' arm | ||
| 10740 | + | 54500 | 90 | 21.5 | -32.9 | NP_116381 | 5' arm 3' arm | ||
| 11094 | - | 138406 | 90 | 20 | -32.8 | NP_116435 | 5' arm 3' arm | ||
| 10784 | + | 110594 | 90 | 22.5 | -32.8 | NP_116417 | 5' arm 3' arm | ||
| 10723 | + | 37977 | 89 | 19.5 | -32.5 | NP_116367 | 5' arm 3' arm | ||
| 11114 | - | 155443 | 89 | 20 | -32.3 | NP_116447 | 5' arm 3' arm | ||
| 11118 | - | 160686 | 89 | 20.5 | -32.3 | NP_116452 | 5' arm 3' arm | ||
| 10835 | + | 138581 | 86 | 22.5 | -32.1 | NP_116435 | 5' arm 3' arm | ||
| 11051 | - | 97418 | 88 | 22 | -32.1 | NP_116409 | 5' arm 3' arm | ||
| 10993 | - | 66805 | 90 | 21 | -31.9 | NP_116390 | 5' arm 3' arm | ||
| 10910 | + | 192256 | 84 | 21.5 | -31.8 | 5' arm 3' arm | |||
| 10867 | + | 162264 | 89 | 23.5 | -31.8 | NP_116453 | 5' arm 3' arm | ||
| 10977 | - | 59205 | 90 | 24.5 | -31.7 | NP_116385 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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