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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10994 | - | 67122 | 89 | 19.5 | -19.4 | NP_116392 | 5' arm 3' arm | ||
| 10903 | + | 186234 | 88 | 19 | -19.4 | 5' arm 3' arm | |||
| 10852 | + | 151640 | 90 | 20 | -19.4 | NP_116445 | 5' arm 3' arm | ||
| 10972 | - | 56584 | 88 | 20.5 | -19.4 | NP_116383 | 5' arm 3' arm | ||
| 10897 | + | 180916 | 90 | 21 | -19.5 | NP_116471 | 5' arm 3' arm | ||
| 11013 | - | 78639 | 90 | 21 | -19.5 | NP_116400 | 5' arm 3' arm | ||
| 11134 | - | 181948 | 88 | 21 | -19.5 | NP_116473 | 5' arm 3' arm | ||
| 11071 | - | 106205 | 84 | 20.5 | -19.5 | 5' arm 3' arm | |||
| 10982 | - | 62386 | 89 | 21 | -19.5 | 5' arm 3' arm | |||
| 10943 | - | 38933 | 89 | 20.5 | -19.51 | 5' arm 3' arm | |||
| 10801 | + | 120848 | 90 | 19 | -19.6 | NP_116425 | 5' arm 3' arm | ||
| 10794 | + | 118329 | 90 | 20 | -19.6 | NP_116422 | 5' arm 3' arm | ||
| 10767 | + | 96586 | 87 | 21.5 | -19.7 | NP_116409 | 5' arm 3' arm | ||
| 10703 | + | 4545 | 89 | 22 | -19.7 | NP_116332 | 5' arm 3' arm | ||
| 11085 | - | 120046 | 79 | 19 | -19.7 | NP_116424 | 5' arm 3' arm | ||
| 10725 | + | 39738 | 90 | 19.5 | -19.73 | NP_116368 | 5' arm 3' arm | ||
| 10956 | - | 47784 | 90 | 20.5 | -19.8 | NP_116375 | 5' arm 3' arm | ||
| 11130 | - | 177585 | 90 | 20.5 | -19.8 | NP_116467 | 5' arm 3' arm | ||
| 11099 | - | 140864 | 89 | 21.5 | -19.8 | NP_116436 | 5' arm 3' arm | ||
| 11025 | - | 85584 | 88 | 23 | -19.8 | NP_116401 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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