miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
53869480 NC_005345.2 Bacteriophage VWB virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26415 - 39947 88 20.5 -25.6 NP_958290 5' arm      3' arm
26296 + 29914 89 21 -25.6 NP_958280 5' arm      3' arm
26309 + 38712 88 23.5 -25.4 NP_958290 5' arm      3' arm
26295 + 29565 89 21.5 -25.4 NP_958280 5' arm      3' arm
26421 - 42169 90 23 -25.2 NP_958293 5' arm      3' arm
26370 - 21157 90 20.5 -25.2 NP_958271 5' arm      3' arm
26282 + 22718 88 20.5 -25 5' arm      3' arm
26386 - 27604 89 23 -24.9 NP_958277 5' arm      3' arm
26378 - 23976 90 20 -24.8 NP_958275 5' arm      3' arm
26387 - 27744 90 19.5 -24.8 NP_958277 5' arm      3' arm
26335 - 3224 87 22 -24.8 5' arm      3' arm
26406 - 36585 89 22 -24.6 NP_958289 5' arm      3' arm
26328 + 48558 90 20 -24.6 NP_958301 5' arm      3' arm
26300 + 35863 87 20.5 -24.5 NP_958289 5' arm      3' arm
26379 - 24312 90 19 -24.5 NP_958275 5' arm      3' arm
26261 + 4845 90 21 -24.5 NP_958248 5' arm      3' arm
26254 + 641 90 21.5 -24.5 YP_115515 5' arm      3' arm
26388 - 28329 90 22 -24.3 NP_958278 5' arm      3' arm
26407 - 36720 88 20.5 -24.3 NP_958289 5' arm      3' arm
26393 - 30858 89 24.5 -24.2 NP_958282 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.