miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22091104 NC_004084.1 Virus PhiCh1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16455 - 41861 85 20.5 -26.4 NP_665981 5' arm      3' arm
16378 - 4635 85 23.5 -26.2 NP_665924 5' arm      3' arm
16490 - 53217 87 21.5 -26.2 NP_666005 5' arm      3' arm
16489 - 52846 89 23 -26.2 NP_666004 5' arm      3' arm
16327 + 39045 83 19 -26.1 NP_665975 5' arm      3' arm
16374 - 3742 90 20.5 -26 NP_665924 5' arm      3' arm
16469 - 46726 87 19 -26 NP_665994 5' arm      3' arm
16377 - 4513 90 19 -25.9 NP_665924 5' arm      3' arm
16343 + 46901 90 22 -25.9 NP_665995 5' arm      3' arm
16254 + 2464 86 19.5 -25.8 5' arm      3' arm
16266 + 9169 90 25 -25.8 NP_665931 5' arm      3' arm
16355 + 51665 88 20.5 -25.8 NP_666002 5' arm      3' arm
16467 - 45753 90 23.5 -25.7 NP_665992 5' arm      3' arm
16335 + 44216 90 21.5 -25.7 NP_665988 5' arm      3' arm
16329 + 40215 83 22.5 -25.7 NP_665977 5' arm      3' arm
16416 - 23375 90 19.5 -25.7 NP_665952 5' arm      3' arm
16330 + 40859 90 19.5 -25.6 NP_665978 5' arm      3' arm
16300 + 23574 90 20 -25.5 NP_665952 5' arm      3' arm
16417 - 23894 90 23 -25.5 NP_665952 5' arm      3' arm
16460 - 43301 89 19 -25.5 NP_665987 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.