miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
24093	-	57332	89	19.5	-27.2	NP_944303		5' arm      3' arm
23936	+	40386	90	20	-27.2	NP_944294		5' arm      3' arm
23895	+	14369	89	24.5	-27.1			5' arm      3' arm
23880	+	7101	88	22.5	-27.1			5' arm      3' arm
24037	-	33175	89	20	-27			5' arm      3' arm
24049	-	40631	88	22	-26.9	NP_944294		5' arm      3' arm
23998	-	18010	88	20	-26.7			5' arm      3' arm
23934	+	39926	88	22	-26.5			5' arm      3' arm
23930	+	36333	89	19	-26.5	NP_944291		5' arm      3' arm
23877	+	5831	90	22.5	-26.5	NP_944238		5' arm      3' arm
23958	+	54990	89	19.5	-26.5	NP_944303		5' arm      3' arm
23873	+	4802	89	21	-26.5	NP_944237		5' arm      3' arm
24052	-	42120	87	22	-26.5	NP_944296		5' arm      3' arm
23940	+	41882	89	21	-26.4			5' arm      3' arm
24100	-	59359	90	19	-26.2	NP_944303		5' arm      3' arm
24109	-	63722	90	19.5	-26.1	NP_944308		5' arm      3' arm
24105	-	61303	90	20	-26.1	NP_944303		5' arm      3' arm
24027	-	30368	89	23	-26.1	NP_944281		5' arm      3' arm
23932	+	37926	90	21	-26	NP_944291		5' arm      3' arm
23882	+	7529	89	20.5	-25.9	NP_944241		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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