miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8101 + 17812 88 19 -23.7 NP_047941 5' arm      3' arm
8127 + 26689 88 23.5 -23.5 NP_047955 5' arm      3' arm
8183 - 20369 90 21 -23.4 NP_047944 5' arm      3' arm
8194 - 23600 89 22 -23.2 NP_047948 5' arm      3' arm
8076 + 5260 89 19.5 -23.1 NP_047927 5' arm      3' arm
8089 + 9465 90 21.5 -23.1 NP_047934 5' arm      3' arm
8124 + 26120 89 22 -23 NP_047955 5' arm      3' arm
8180 - 18167 87 21 -23 NP_047941 5' arm      3' arm
8126 + 26477 90 20 -22.7 NP_047955 5' arm      3' arm
8085 + 7973 89 21 -22.7 NP_047931 5' arm      3' arm
8134 + 30424 90 19 -22.62 NP_047957 5' arm      3' arm
8218 - 38698 90 21.5 -22.6 NP_047974 5' arm      3' arm
8166 - 9132 88 19.5 -22.5 NP_047934 5' arm      3' arm
8102 + 17943 90 19.5 -22.5 NP_047941 5' arm      3' arm
8163 - 7475 90 20 -22.5 NP_047930 5' arm      3' arm
8140 + 34301 90 22 -22.4 NP_047965 5' arm      3' arm
8170 - 11553 87 19.5 -22.4 NP_047935 5' arm      3' arm
8168 - 10875 87 21 -22.3 NP_047934 5' arm      3' arm
8173 - 13781 90 22.5 -22.3 NP_047937 5' arm      3' arm
8202 - 30063 90 20 -22.2 NP_047957 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.