miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8224 - 40237 85 19 -25.1 NP_047974 5' arm      3' arm
8192 - 22918 89 19.5 -25.1 NP_047947 5' arm      3' arm
8077 + 5901 90 20 -25 NP_047927 5' arm      3' arm
8096 + 14529 89 19 -24.9 NP_047938 5' arm      3' arm
8095 + 14049 90 21.5 -24.9 NP_047938 5' arm      3' arm
8141 + 35178 89 20.5 -24.7 NP_047967 5' arm      3' arm
8146 + 36629 90 21 -24.7 NP_047970 5' arm      3' arm
8206 - 32403 89 21.5 -24.7 5' arm      3' arm
8110 + 21939 90 19.5 -24.7 NP_047946 5' arm      3' arm
8144 + 36320 88 21 -24.6 NP_047970 5' arm      3' arm
8099 + 16691 89 22 -24.5 NP_047940 5' arm      3' arm
8105 + 19347 90 21 -24.5 NP_047944 5' arm      3' arm
8171 - 11732 87 19 -24.4 NP_047935 5' arm      3' arm
8196 - 26213 87 20.5 -24.3 NP_047955 5' arm      3' arm
8179 - 17726 90 20 -24.2 NP_047941 5' arm      3' arm
8214 - 35243 90 19.5 -24.2 NP_047967 5' arm      3' arm
8225 - 41245 90 19 -24.1 NP_047976 5' arm      3' arm
8204 - 30582 87 21.5 -23.9 NP_047957 5' arm      3' arm
8101 + 17812 88 19 -23.7 NP_047941 5' arm      3' arm
8098 + 15004 90 21 -23.7 NP_047939 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.