miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8097 + 14740 88 20.5 -26.21 NP_047938 5' arm      3' arm
8095 + 14049 90 21.5 -24.9 NP_047938 5' arm      3' arm
8096 + 14529 89 19 -24.9 NP_047938 5' arm      3' arm
8098 + 15004 90 21 -23.7 NP_047939 5' arm      3' arm
8174 - 15555 86 19 -27 NP_047940 5' arm      3' arm
8099 + 16691 89 22 -24.5 NP_047940 5' arm      3' arm
8176 - 16442 90 21.5 -27.2 NP_047940 5' arm      3' arm
8175 - 16324 90 21.5 -20.7 NP_047940 5' arm      3' arm
8178 - 16777 89 20 -26.3 NP_047940 5' arm      3' arm
8177 - 16558 90 23 -20 NP_047940 5' arm      3' arm
8102 + 17943 90 19.5 -22.5 NP_047941 5' arm      3' arm
8180 - 18167 87 21 -23 NP_047941 5' arm      3' arm
8179 - 17726 90 20 -24.2 NP_047941 5' arm      3' arm
8100 + 17301 89 23 -29 NP_047941 5' arm      3' arm
8101 + 17812 88 19 -23.7 NP_047941 5' arm      3' arm
8103 + 18600 89 20.5 -21.6 NP_047943 5' arm      3' arm
8108 + 21204 88 19 -20.8 NP_047944 5' arm      3' arm
8106 + 19700 90 20 -20.5 NP_047944 5' arm      3' arm
8184 - 20525 89 19 -20.6 NP_047944 5' arm      3' arm
8185 - 20672 84 19.5 -21.42 NP_047944 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.