miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8849	+	34792	89	22.5	-22.6	NP_061546		5' arm      3' arm
8882	-	3830	89	20.5	-22.6	NP_061501		5' arm      3' arm
8804	+	8267	84	20.5	-22.5	NP_061508		5' arm      3' arm
8908	-	27321	86	19.5	-22.4	NP_061531		5' arm      3' arm
8873	+	54177	89	19.5	-22.4			5' arm      3' arm
8930	-	49613	86	22	-22.3	NP_061572		5' arm      3' arm
8860	+	42159	85	19.5	-22.3	NP_061560		5' arm      3' arm
8824	+	17718	90	22.5	-22.3	NP_061522		5' arm      3' arm
8896	-	13446	86	19.5	-22.3	NP_061516		5' arm      3' arm
8865	+	45931	86	19.5	-22.3	NP_061565		5' arm      3' arm
8821	+	16910	82	19.5	-22.2	NP_061522		5' arm      3' arm
8820	+	16801	87	19.5	-22.2	NP_061522		5' arm      3' arm
8817	+	16325	84	21	-22.2	NP_061522		5' arm      3' arm
8788	+	427	78	20.5	-22.1	NP_061498		5' arm      3' arm
8859	+	41976	89	20	-22	NP_061560		5' arm      3' arm
8921	-	43170	90	19	-21.9	NP_061562		5' arm      3' arm
8936	-	55393	90	19.5	-21.9	NP_061587		5' arm      3' arm
8791	+	1438	87	19	-21.9	NP_061498		5' arm      3' arm
8932	-	52152	78	20	-21.7	NP_061578		5' arm      3' arm
8844	+	32449	78	21	-21.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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