miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8912	-	34027	89	19	-23.2	NP_061542		5' arm      3' arm
8807	+	11235	90	21.5	-23			5' arm      3' arm
8798	+	6004	87	23.5	-23	NP_061504		5' arm      3' arm
8846	+	32815	89	19.5	-22.9	NP_061540		5' arm      3' arm
8900	-	17355	89	22	-22.9	NP_061522		5' arm      3' arm
8864	+	44722	73	20.5	-22.9	NP_061564		5' arm      3' arm
8897	-	14101	90	23	-22.9	NP_061517		5' arm      3' arm
8837	+	28813	89	20.5	-22.9	NP_061534		5' arm      3' arm
8917	-	38418	90	19	-22.9	NP_061552		5' arm      3' arm
8880	-	3082	85	21.5	-22.9	NP_061500		5' arm      3' arm
8877	-	1424	90	24	-22.9	NP_061498		5' arm      3' arm
8902	-	17690	87	20.5	-22.8	NP_061522		5' arm      3' arm
8829	+	24931	90	23	-22.8	NP_061526		5' arm      3' arm
8811	+	12026	88	21	-22.8	NP_061515		5' arm      3' arm
8797	+	3744	90	19	-22.8	NP_061501		5' arm      3' arm
8827	+	19517	85	19	-22.8	NP_061523		5' arm      3' arm
8916	-	37649	89	19	-22.77			5' arm      3' arm
8799	+	6546	87	21.5	-22.7	NP_061505		5' arm      3' arm
8895	-	13360	87	21	-22.6	NP_061516		5' arm      3' arm
8849	+	34792	89	22.5	-22.6	NP_061546		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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