miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5550 + 12015 90 19.5 -28.1 NP_044605 5' arm      3' arm
5944 - 106254 78 21 -28.1 NP_044651 5' arm      3' arm
5930 - 94520 90 21.5 -28 NP_044644 5' arm      3' arm
5851 - 48460 88 21.5 -28 NP_044625 5' arm      3' arm
5584 + 30299 89 20.5 -28 NP_044617 5' arm      3' arm
5696 + 95664 90 21 -28 NP_044645 5' arm      3' arm
5855 - 49705 89 24 -28 NP_044626 5' arm      3' arm
5623 + 49165 88 19 -27.9 NP_044626 5' arm      3' arm
5872 - 59812 90 19.5 -27.7 NP_044631 5' arm      3' arm
5888 - 68164 90 22 -27.7 NP_044634 5' arm      3' arm
5770 + 145853 87 20 -27.6 5' arm      3' arm
5667 + 80383 90 22 -27.6 NP_044638 5' arm      3' arm
5797 - 13367 89 19 -27.6 NP_044606 5' arm      3' arm
5676 + 85070 89 21.5 -27.6 NP_044640 5' arm      3' arm
5981 - 132380 87 20 -27.6 5' arm      3' arm
5755 + 139912 88 20 -27.6 NP_044669 5' arm      3' arm
5946 - 107721 90 19.5 -27.5 NP_044653 5' arm      3' arm
5744 + 132755 86 23.5 -27.5 NP_044663 5' arm      3' arm
5715 + 109913 90 20.5 -27.5 NP_044655 5' arm      3' arm
5850 - 48308 86 19 -27.5 NP_044625 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.