miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5970 - 125957 88 20 -28.72 5' arm      3' arm
5577 + 26850 89 23 -28.7 5' arm      3' arm
5671 + 81965 87 19.5 -28.7 NP_044639 5' arm      3' arm
5673 + 83654 89 20.5 -28.7 NP_044639 5' arm      3' arm
5789 - 4985 87 22 -28.5 NP_044660 5' arm      3' arm
5564 + 21047 88 19 -28.5 NP_044610 5' arm      3' arm
5730 + 121386 87 22 -28.5 NP_044660 5' arm      3' arm
5714 + 109322 90 22.5 -28.4 NP_044655 5' arm      3' arm
5906 - 80711 86 21 -28.4 5' arm      3' arm
5652 + 71528 90 20.5 -28.3 NP_044638 5' arm      3' arm
5637 + 60212 88 22.5 -28.3 NP_044631 5' arm      3' arm
5800 - 16300 88 22 -28.3 NP_044607 5' arm      3' arm
5722 + 116395 89 20 -28.3 NP_044659 5' arm      3' arm
5771 + 146189 88 24 -28.3 5' arm      3' arm
5980 - 132044 88 24 -28.3 5' arm      3' arm
5735 + 123405 89 28 -28.2 5' arm      3' arm
5571 + 25072 85 21 -28.2 NP_044613 5' arm      3' arm
5845 - 45182 90 22.5 -28.2 NP_044623 5' arm      3' arm
5784 - 2966 89 28 -28.2 5' arm      3' arm
5840 - 42981 89 21 -28.12 NP_044622 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.