miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5964 - 120512 87 20 -30.5 5' arm      3' arm
5979 - 131824 88 22 -30.2 5' arm      3' arm
5977 - 131252 89 21 -20.2 5' arm      3' arm
5981 - 132380 87 20 -27.6 5' arm      3' arm
5951 - 113457 89 23 -29.5 5' arm      3' arm
5943 - 105445 90 22.5 -22.1 5' arm      3' arm
5577 + 26850 89 23 -28.7 5' arm      3' arm
5906 - 80711 86 21 -28.4 5' arm      3' arm
5903 - 80198 89 20 -20.5 5' arm      3' arm
5913 - 84274 90 19.5 -24 5' arm      3' arm
5940 - 103627 88 20.5 -23.6 5' arm      3' arm
5924 - 89906 88 23.5 -19.7 5' arm      3' arm
5928 - 92922 90 19.5 -27.4 5' arm      3' arm
5952 - 113638 82 20 -26.5 5' arm      3' arm
5781 - 650 90 28.5 -27 NP_044600 5' arm      3' arm
5965 - 121177 90 19 -30.3 NP_044601 5' arm      3' arm
5537 + 5033 90 21 -26.5 NP_044601 5' arm      3' arm
5786 - 3555 90 20 -25.12 NP_044601 5' arm      3' arm
5731 + 122249 87 23 -33.4 NP_044601 5' arm      3' arm
5788 - 4122 87 23 -33.4 NP_044601 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.