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| GenBank Identifier | RefSeq Acc. | Name |
| 9629378 | NC_001806.1 | Human herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5929 | - | 93858 | 89 | 19.5 | -25.2 | NP_044644 | 5' arm 3' arm | ||
| 5896 | - | 75431 | 90 | 19.5 | -21.7 | NP_044638 | 5' arm 3' arm | ||
| 5939 | - | 102582 | 84 | 19.5 | -24.7 | NP_044649 | 5' arm 3' arm | ||
| 5949 | - | 111955 | 86 | 19.5 | -21.7 | NP_044655 | 5' arm 3' arm | ||
| 5592 | + | 34104 | 88 | 19.5 | -23 | NP_044616 | 5' arm 3' arm | ||
| 5588 | + | 32435 | 90 | 19.5 | -26.2 | NP_044618 | 5' arm 3' arm | ||
| 5760 | + | 141904 | 90 | 19.5 | -23.5 | NP_044670 | 5' arm 3' arm | ||
| 5759 | + | 141555 | 89 | 19.5 | -19.7 | NP_044670 | 5' arm 3' arm | ||
| 5582 | + | 29201 | 90 | 19.5 | -22.7 | NP_044616 | 5' arm 3' arm | ||
| 5579 | + | 28248 | 77 | 19.5 | -30.1 | NP_044615 | 5' arm 3' arm | ||
| 5852 | - | 48661 | 89 | 19.5 | -22 | 5' arm 3' arm | |||
| 5872 | - | 59812 | 90 | 19.5 | -27.7 | NP_044631 | 5' arm 3' arm | ||
| 5880 | - | 64711 | 84 | 19.5 | -24 | NP_044632 | 5' arm 3' arm | ||
| 5753 | + | 139671 | 90 | 19.5 | -24.2 | 5' arm 3' arm | |||
| 5748 | + | 135905 | 89 | 19.5 | -20.6 | NP_044665 | 5' arm 3' arm | ||
| 5842 | - | 44004 | 89 | 19.5 | -20.8 | NP_044623 | 5' arm 3' arm | ||
| 5641 | + | 63727 | 88 | 19.5 | -21.1 | NP_044632 | 5' arm 3' arm | ||
| 5578 | + | 27216 | 90 | 19.5 | -23.5 | NP_044614 | 5' arm 3' arm | ||
| 5576 | + | 26475 | 89 | 19.5 | -22.2 | NP_044613 | 5' arm 3' arm | ||
| 5954 | - | 114880 | 90 | 19.5 | -22.6 | NP_044657 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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