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| GenBank Identifier | RefSeq Acc. | Name |
| 9629378 | NC_001806.1 | Human herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5542 | + | 7490 | 90 | 19.5 | -19.4 | 5' arm 3' arm | |||
| 5595 | + | 35174 | 90 | 19.5 | -27.4 | NP_044619 | 5' arm 3' arm | ||
| 5592 | + | 34104 | 88 | 19.5 | -23 | NP_044616 | 5' arm 3' arm | ||
| 5653 | + | 73236 | 87 | 19.5 | -23.3 | NP_044638 | 5' arm 3' arm | ||
| 5666 | + | 80012 | 90 | 19.5 | -30.4 | NP_044638 | 5' arm 3' arm | ||
| 5550 | + | 12015 | 90 | 19.5 | -28.1 | NP_044605 | 5' arm 3' arm | ||
| 5576 | + | 26475 | 89 | 19.5 | -22.2 | NP_044613 | 5' arm 3' arm | ||
| 5578 | + | 27216 | 90 | 19.5 | -23.5 | NP_044614 | 5' arm 3' arm | ||
| 5949 | - | 111955 | 86 | 19.5 | -21.7 | NP_044655 | 5' arm 3' arm | ||
| 5650 | + | 70658 | 86 | 19.5 | -26 | NP_044637 | 5' arm 3' arm | ||
| 5694 | + | 93909 | 90 | 19.5 | -27.2 | NP_044644 | 5' arm 3' arm | ||
| 5561 | + | 19553 | 90 | 19.5 | -24.1 | NP_044609 | 5' arm 3' arm | ||
| 5768 | + | 145077 | 89 | 19.5 | -19.4 | NP_044674 | 5' arm 3' arm | ||
| 5946 | - | 107721 | 90 | 19.5 | -27.5 | NP_044653 | 5' arm 3' arm | ||
| 5669 | + | 80837 | 88 | 19.5 | -20.3 | NP_044639 | 5' arm 3' arm | ||
| 5582 | + | 29201 | 90 | 19.5 | -22.7 | NP_044616 | 5' arm 3' arm | ||
| 5579 | + | 28248 | 77 | 19.5 | -30.1 | NP_044615 | 5' arm 3' arm | ||
| 5958 | - | 116003 | 88 | 19.5 | -19.6 | NP_044658 | 5' arm 3' arm | ||
| 5961 | - | 118881 | 90 | 19.5 | -19.4 | 5' arm 3' arm | |||
| 5939 | - | 102582 | 84 | 19.5 | -24.7 | NP_044649 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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