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| GenBank Identifier | RefSeq Acc. | Name |
| 9629378 | NC_001806.1 | Human herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5599 | + | 36784 | 85 | 20 | -29.7 | NP_044620 | 5' arm 3' arm | ||
| 5925 | - | 90747 | 89 | 23.5 | -29.6 | NP_044642 | 5' arm 3' arm | ||
| 5665 | + | 79324 | 87 | 25 | -29.6 | NP_044638 | 5' arm 3' arm | ||
| 5951 | - | 113457 | 89 | 23 | -29.5 | 5' arm 3' arm | |||
| 5933 | - | 97423 | 90 | 23 | -29.5 | NP_044646 | 5' arm 3' arm | ||
| 5875 | - | 62228 | 90 | 20.5 | -29.44 | 5' arm 3' arm | |||
| 5580 | + | 28927 | 78 | 20 | -29.4 | 5' arm 3' arm | |||
| 5706 | + | 99667 | 87 | 19 | -29.3 | NP_044648 | 5' arm 3' arm | ||
| 5548 | + | 10980 | 85 | 22 | -29.2 | NP_044604 | 5' arm 3' arm | ||
| 5629 | + | 53584 | 90 | 22.5 | -29.1 | NP_044629 | 5' arm 3' arm | ||
| 5775 | + | 147302 | 88 | 20.5 | -29 | NP_044662 | 5' arm 3' arm | ||
| 5976 | - | 130931 | 88 | 20.5 | -29 | NP_044676 | 5' arm 3' arm | ||
| 5915 | - | 84626 | 88 | 21.5 | -29 | NP_044640 | 5' arm 3' arm | ||
| 5635 | + | 59811 | 84 | 20 | -28.9 | NP_044631 | 5' arm 3' arm | ||
| 5552 | + | 12686 | 85 | 22 | -28.9 | NP_044606 | 5' arm 3' arm | ||
| 5575 | + | 25919 | 90 | 22 | -28.9 | NP_044613 | 5' arm 3' arm | ||
| 5912 | - | 83941 | 88 | 22.5 | -28.8 | NP_044639 | 5' arm 3' arm | ||
| 5782 | - | 2477 | 89 | 20.5 | -28.8 | 5' arm 3' arm | |||
| 5737 | + | 123894 | 89 | 20.5 | -28.8 | 5' arm 3' arm | |||
| 5970 | - | 125957 | 88 | 20 | -28.72 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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